Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NG829_RS05665 Genome accession   NZ_CP099532
Coordinates   1325402..1326661 (-) Length   419 a.a.
NCBI ID   WP_267122125.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain LT6-16-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320402..1331661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG829_RS05640 (NG829_05635) - 1321410..1321592 (+) 183 WP_267083722.1 hypothetical protein -
  NG829_RS05645 (NG829_05640) - 1321776..1322453 (+) 678 WP_145703507.1 response regulator transcription factor -
  NG829_RS05650 (NG829_05645) - 1322446..1323780 (+) 1335 WP_043090504.1 HAMP domain-containing sensor histidine kinase -
  NG829_RS05655 (NG829_05650) coaE 1323889..1324518 (-) 630 WP_267122124.1 dephospho-CoA kinase -
  NG829_RS05660 (NG829_05655) - 1324532..1325395 (-) 864 WP_017910397.1 A24 family peptidase -
  NG829_RS05665 (NG829_05660) pilC 1325402..1326661 (-) 1260 WP_267122125.1 type II secretion system F family protein Machinery gene
  NG829_RS05675 (NG829_05670) - 1327030..1327473 (+) 444 WP_318526824.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NG829_RS05680 (NG829_05675) pilB 1327827..1329560 (+) 1734 WP_267122126.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NG829_RS05685 (NG829_05680) pilR 1329791..1331179 (-) 1389 WP_043095008.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45672.92 Da        Isoelectric Point: 10.2185

>NTDB_id=700433 NG829_RS05665 WP_267122125.1 1325402..1326661(-) (pilC) [Xanthomonas sacchari strain LT6-16-1]
MSATRSAAKKEPIARATNQQVPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGASGKKITPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLVFVVPQFEDVFKGFGADLPAFTQLIVSASRFMVSYWFP
MLLALIAGSVGFIFAYKRSLSMQHAMDRLVLKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYEK
SVLRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=700433 NG829_RS05665 WP_267122125.1 1325402..1326661(-) (pilC) [Xanthomonas sacchari strain LT6-16-1]
ATGTCCGCAACGCGCAGCGCAGCCAAGAAAGAGCCGATCGCACGGGCAACCAATCAACAGGTGCCGTTTGTTTGGGAGGG
TACTGACAAGCGCGGCGTGAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGCGCGGAGTTGCGCCGCC
AGGGTATCACCCCCTCGGTGGTCAAGCCAAAGCCGAAACCTCTGTTCGGTGCCAGCGGCAAAAAGATCACGCCCAAGGAC
ATCGCTTTCTTCAGCCGCCAGATGGCAACAATGATGAAATCGGGCGTACCGATCGTGGGTTCGCTGGAAATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTCGACCAGGTGCGCACCGACATCGAGGGCGGTTCGTCGCTGTATGAGG
CGATCAGCAAGCATCCAGTGCAGTTCGATGAGCTGTACCGCAATCTAGTGAAGGCCGGCGAAGGCGCCGGTGTGCTGGAA
ACCGTCCTGGAGACGGTTGCTACTTACAAAGAGAATATCGAGGCACTGAAAGGTAAGATCAAGAAGGCCTTATTCTATCC
CGCGATGGTGATGGCCGTCGCACTGATCGTGAGTTCGATACTGCTGGTCTTTGTGGTTCCGCAGTTCGAAGACGTGTTCA
AGGGGTTTGGCGCAGATCTCCCTGCCTTCACTCAACTGATCGTGTCGGCCTCGCGCTTCATGGTGTCTTATTGGTTTCCG
ATGCTGCTCGCATTGATCGCAGGCTCAGTGGGATTCATCTTCGCTTACAAGCGATCACTTTCGATGCAGCATGCGATGGA
TCGACTGGTGCTAAAGGTGCCGATCATCGGCCAGATCATGCATAACAGCTCGGTGGCCCGTTTTTCCCGAACGCTGGCCG
TGACCTTCCGCGCCGGCGTGCCGCTGGTGGAGGCGCTGGACATCGTCGCCGGTGCCACCGGCAACAGCGTCTATGAAAAA
TCGGTGTTGCGCATGCGCGACGACGTTGCGGTCGGTTACCCGGTCAATGTGGCGATGAAGCAGACCAATCTGTTTCCGCA
CATGGTCATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTGGATGCAATGCTGTTCAAAGTGGCTGAGTACTTCG
AACAGGAAGTCAATAATGCGGTCGATGCCCTAAGCAGCCTGCTGGAACCGTTGATCATGGTGTTTATCGGTACCATCGTC
GGCGGCATGGTCGTTGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.535

94.511

0.506
  pilC Acinetobacter baumannii D1279779

52.239

95.943

0.501
  pilC Acinetobacter baylyi ADP1

51.724

96.897

0.501
  pilC Pseudomonas stutzeri DSM 10701

52.273

94.511

0.494
  pilG Neisseria gonorrhoeae MS11

43.467

94.988

0.413
  pilG Neisseria meningitidis 44/76-A

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilC Vibrio campbellii strain DS40M4

40.955

94.988

0.389