Detailed information NTG0700435

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NG829_RS05685
• Genome accession: NZ_CP099532
• Coordinates: 1329791..1331179 (-)
• Length: 462 a.a.
• NCBI ID: WP_043095008.1
• Uniprot ID: A0AAW9GVB5
• Organism: Xanthomonas sacchari strain LT6-16-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1324791..1336179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NG829_RS05665 (NG829_05660)	pilC	1325402..1326661 (-)	1260	WP_267122125.1	type II secretion system F family protein	Machinery gene
NG829_RS05675 (NG829_05670)	-	1327030..1327473 (+)	444	WP_318526824.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NG829_RS05680 (NG829_05675)	pilB	1327827..1329560 (+)	1734	WP_267122126.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NG829_RS05685 (NG829_05680)	pilR	1329791..1331179 (-)	1389	WP_043095008.1	sigma-54 dependent transcriptional regulator	Regulator
NG829_RS05690 (NG829_05685)	-	1331262..1332875 (-)	1614	WP_267122127.1	ATP-binding protein	-
NG829_RS05695 (NG829_05690)	sucC	1333267..1334436 (+)	1170	WP_010342227.1	ADP-forming succinate--CoA ligase subunit beta	-
NG829_RS05700 (NG829_05695)	sucD	1334459..1335334 (+)	876	WP_026144653.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49908.29 Da
• Isoelectric Point: 6.6703

>NTDB_id=700435 NG829_RS05685 WP_043095008.1 1329791..1331179(-) (pilR) [Xanthomonas sacchari strain LT6-16-1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNNESRAAPPQPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARSAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISATDLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=700435 NG829_RS05685 WP_043095008.1 1329791..1331179(-) (pilR) [Xanthomonas sacchari strain LT6-16-1]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAATCCCTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCAAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCAGGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACGAAAGCCGCGCCGCGCCGCCGCAGCCTG
CCCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGCCCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGAACAGGGCGC
CCGCTCAGCCGGCCCCTTCGTCCCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCACGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGAC
GAGGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CGCCACCGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGCCCCACCCCGCTGCTGTCGCCCTCCGCCCTGGA
CGCCCTGAGCAGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAGCGCGCCCTGGCAATGGCCGAGG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAAGCCGCCCCGGCC
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCCCTGCCGTCCTACATCGAGCAACTCGAACGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAACTGGGCATCACCTTTCGCGCGTTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.826	99.567	0.626
pilR	Acinetobacter baumannii strain A118	47.084	100	0.472