Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | PCP50_RS09465 | Genome accession | NZ_CP115245 |
| Coordinates | 2031788..2032252 (+) | Length | 154 a.a. |
| NCBI ID | WP_003122079.1 | Uniprot ID | P17836 |
| Organism | Pseudomonas aeruginosa strain F041 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2026788..2037252
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCP50_RS09440 (PCP50_09445) | yacG | 2026958..2027158 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PCP50_RS09445 (PCP50_09450) | coaE | 2027155..2027766 (-) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| PCP50_RS09450 (PCP50_09455) | pilD | 2027763..2028635 (-) | 873 | WP_023084740.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PCP50_RS09455 (PCP50_09460) | pilC | 2028636..2029853 (-) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| PCP50_RS09460 (PCP50_09465) | pilB | 2029857..2031557 (-) | 1701 | WP_003107297.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PCP50_RS09465 (PCP50_09470) | pilA | 2031788..2032252 (+) | 465 | WP_003122079.1 | pilin | Machinery gene |
| PCP50_RS09470 (PCP50_09475) | - | 2032327..2033712 (+) | 1386 | WP_025324686.1 | O-antigen ligase family protein | - |
| PCP50_RS09480 (PCP50_09485) | nadC | 2033893..2034741 (-) | 849 | WP_003104915.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16277.67 Da Isoelectric Point: 8.9987
>NTDB_id=698409 PCP50_RS09465 WP_003122079.1 2031788..2032252(+) (pilA) [Pseudomonas aeruginosa strain F041]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSATPKDTQYDIGFTE
STLLDGSGKSQIQVTDNKDGTVELVATLGKSSGSAIKGAVITVSRKNDGVWNCKITKTPTAWKPNYAPANCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSATPKDTQYDIGFTE
STLLDGSGKSQIQVTDNKDGTVELVATLGKSSGSAIKGAVITVSRKNDGVWNCKITKTPTAWKPNYAPANCPKS
Nucleotide
Download Length: 465 bp
>NTDB_id=698409 PCP50_RS09465 WP_003122079.1 2031788..2032252(+) (pilA) [Pseudomonas aeruginosa strain F041]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTTGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAGGAGATTGTTTCCAGCGCGACTCCTAAAGATACCCAGTATGACATTGGCTTCACCGAG
TCTACTTTGCTAGATGGTTCTGGTAAGAGTCAGATCCAGGTAACGGACAATAAAGATGGCACCGTTGAGTTGGTCGCTAC
CTTGGGTAAATCTTCTGGTTCCGCCATCAAAGGGGCTGTAATCACTGTTTCGCGTAAAAATGACGGAGTCTGGAACTGCA
AAATCACCAAAACTCCTACAGCTTGGAAGCCCAACTACGCTCCGGCTAATTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTTGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAGGAGATTGTTTCCAGCGCGACTCCTAAAGATACCCAGTATGACATTGGCTTCACCGAG
TCTACTTTGCTAGATGGTTCTGGTAAGAGTCAGATCCAGGTAACGGACAATAAAGATGGCACCGTTGAGTTGGTCGCTAC
CTTGGGTAAATCTTCTGGTTCCGCCATCAAAGGGGCTGTAATCACTGTTTCGCGTAAAAATGACGGAGTCTGGAACTGCA
AAATCACCAAAACTCCTACAGCTTGGAAGCCCAACTACGCTCCGGCTAATTGCCCGAAATCCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
44.737 |
98.701 |
0.442 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
44.444 |
99.351 |
0.442 |
| pilA | Pseudomonas aeruginosa PAK |
45.985 |
88.961 |
0.409 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.073 |
98.052 |
0.383 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
37.255 |
99.351 |
0.37 |
| pilA2 | Legionella pneumophila str. Paris |
38 |
97.403 |
0.37 |
| pilA | Vibrio cholerae strain A1552 |
36.774 |
100 |
0.37 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.774 |
100 |
0.37 |
| pilA | Vibrio cholerae C6706 |
36.774 |
100 |
0.37 |