Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M5E07_RS14620 Genome accession   NZ_CP098732
Coordinates   3040567..3041793 (+) Length   408 a.a.
NCBI ID   WP_252220331.1    Uniprot ID   A0AAE9S094
Organism   Acinetobacter tibetensis strain Y-23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3035567..3046793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS14580 (M5E07_14580) rimP 3036105..3036629 (-) 525 WP_252220325.1 ribosome maturation factor RimP -
  M5E07_RS14605 (M5E07_14605) secG 3037417..3037746 (-) 330 WP_116758771.1 preprotein translocase subunit SecG -
  M5E07_RS14610 (M5E07_14610) tpiA 3037760..3038551 (-) 792 WP_252220328.1 triose-phosphate isomerase -
  M5E07_RS14615 (M5E07_14615) pilB 3038832..3040538 (+) 1707 WP_116758773.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M5E07_RS14620 (M5E07_14620) pilC 3040567..3041793 (+) 1227 WP_252220331.1 type II secretion system F family protein Machinery gene
  M5E07_RS14625 (M5E07_14625) pilD 3041793..3042653 (+) 861 WP_252220334.1 A24 family peptidase Machinery gene
  M5E07_RS14630 (M5E07_14630) coaE 3042656..3043273 (+) 618 WP_252220337.1 dephospho-CoA kinase -
  M5E07_RS14635 (M5E07_14635) - 3043270..3044187 (-) 918 WP_116758777.1 DMT family transporter -
  M5E07_RS14640 (M5E07_14640) rlmB 3044222..3044974 (-) 753 WP_116758778.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M5E07_RS14645 (M5E07_14645) - 3045111..3045434 (-) 324 WP_016168405.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44791.33 Da        Isoelectric Point: 9.8028

>NTDB_id=697484 M5E07_RS14620 WP_252220331.1 3040567..3041793(+) (pilC) [Acinetobacter tibetensis strain Y-23]
MAVKKAQMMPTFSYEGVDRKGAKIKGELPARNMALAKVTLRKQGVAIKTIREKRKNILEGLLKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALKKYPLYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPLTVICVAVIVTIILMVKVVPVFESVFSSFGADLPAFTKMVVNMSEWMQKYWFILIIAIGVLIA
VFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEQAVLKIRDDVA
TGQQLQFAMRVTDKFPAMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=697484 M5E07_RS14620 WP_252220331.1 3040567..3041793(+) (pilC) [Acinetobacter tibetensis strain Y-23]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAGTTATGAAGGAGTTGACCGCAAAGGGGCAAAAATTAAAGGGGA
ACTCCCTGCACGGAATATGGCTTTAGCTAAAGTCACATTACGTAAGCAAGGGGTTGCCATTAAGACCATTCGAGAAAAGC
GAAAAAATATTCTTGAAGGTTTGTTAAAAAAGAAAGTCAGCACACTAGATATCACCATTTTCACACGCCAATTGGCCACC
ATGATGAAAGCGGGTGTACCTTTGGTACAAAGCTTTGAAATTGTGGCCGAGGGCTTAGAAAACCCAGCAATGCGAGAAGT
GGTTTTGGGCATTAAAGGCGAAGTTGAAGGCGGTAATACCTTTGCTGGTGCGCTAAAAAAATACCCCCTGTACTTTGACA
ATTTATTTTGCTCTTTGGTCGAATCTGGCGAACAATCAGGCGCGCTTGAAACTATGTTGGATCGTGTCGCAATTTATAAA
GAAAAAAGCGAACTCCTAAAACAAAAAATCAAAAAAGCCATGAAATATCCGCTCACTGTAATTTGTGTGGCTGTAATTGT
AACCATTATTCTAATGGTGAAAGTTGTTCCTGTATTTGAAAGCGTATTCTCTTCTTTCGGTGCAGATCTTCCAGCCTTTA
CCAAAATGGTCGTGAATATGTCAGAGTGGATGCAAAAATACTGGTTCATTCTAATTATCGCGATTGGAGTCTTGATTGCT
GTATTTCTTGAAGCAAAAAAACGGAGTAAAAAATTCCGCGACTTTTTGGATAAAGCGGCATTAAAGGCTCCTATTTTTGG
TGATCTGGTTTATAAAGCCATTATCGCGCGTTACAGCCGTACTTTAGCCACGACCTTTGCTGCCGGCGTTCCACTGATTG
ATGCTTTAGAATCAACTGCTGGTGCCACCAATAACGTGGTCTATGAGCAAGCAGTACTTAAAATCCGAGATGATGTTGCG
ACTGGGCAACAGTTGCAATTTGCCATGCGGGTCACGGATAAATTTCCTGCTATGGCGGTACAAATGGTTGCCATTGGTGA
GGAATCAGGTGCACTGGATGCCATGTTAGATAAAGTCGCGACACATTATGAAAATGAAGTCGATAATGCCGTTGATGGCT
TAACATCAATGATGGAACCCTTAATCATGGCGGTTCTTGGGGTCCTTGTCGGTGGTCTGGTCATTGCCATGTATCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

83.333

100

0.833
  pilC Pseudomonas stutzeri DSM 10701

60.494

99.265

0.6
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria meningitidis 44/76-A

46.366

97.794

0.453
  pilG Neisseria gonorrhoeae MS11

46.366

97.794

0.453
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407