Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCP79_RS12600 Genome accession   NZ_CP115232
Coordinates   2675768..2676133 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain F050     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2670768..2681133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP79_RS12570 (PCP79_12570) pyrR 2671390..2671902 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PCP79_RS12575 (PCP79_12575) ruvX 2672014..2672448 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PCP79_RS12580 (PCP79_12580) - 2672448..2673017 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PCP79_RS12585 (PCP79_12585) - 2673066..2673959 (-) 894 WP_003162015.1 energy transducer TonB -
  PCP79_RS12590 (PCP79_12590) gshB 2674106..2675059 (-) 954 WP_003100943.1 glutathione synthase -
  PCP79_RS12595 (PCP79_12595) pilG 2675314..2675721 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PCP79_RS12600 (PCP79_12600) pilH 2675768..2676133 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PCP79_RS12605 (PCP79_12605) - 2676184..2676720 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PCP79_RS12610 (PCP79_12610) pilJ 2676805..2678853 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PCP79_RS12615 (PCP79_12615) pilK 2678914..2679789 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=697484 PCP79_RS12600 WP_003084587.1 2675768..2676133(+) (pilH) [Pseudomonas aeruginosa strain F050]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=697484 PCP79_RS12600 WP_003084587.1 2675768..2676133(+) (pilH) [Pseudomonas aeruginosa strain F050]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTAATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364