NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	M5E07_RS14625	Genome accession	NZ_CP098732
Coordinates	3041793..3042653 (+)	Length	286 a.a.
NCBI ID	WP_252220334.1	Uniprot ID	A0AAE9LQX4
Organism	Acinetobacter tibetensis strain Y-23
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3036793..3047653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5E07_RS14605 (M5E07_14605)	secG	3037417..3037746 (-)	330	WP_116758771.1	preprotein translocase subunit SecG	-
M5E07_RS14610 (M5E07_14610)	tpiA	3037760..3038551 (-)	792	WP_252220328.1	triose-phosphate isomerase	-
M5E07_RS14615 (M5E07_14615)	pilB	3038832..3040538 (+)	1707	WP_116758773.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M5E07_RS14620 (M5E07_14620)	pilC	3040567..3041793 (+)	1227	WP_252220331.1	type II secretion system F family protein	Machinery gene
M5E07_RS14625 (M5E07_14625)	pilD	3041793..3042653 (+)	861	WP_252220334.1	A24 family peptidase	Machinery gene
M5E07_RS14630 (M5E07_14630)	coaE	3042656..3043273 (+)	618	WP_252220337.1	dephospho-CoA kinase	-
M5E07_RS14635 (M5E07_14635)	-	3043270..3044187 (-)	918	WP_116758777.1	DMT family transporter	-
M5E07_RS14640 (M5E07_14640)	rlmB	3044222..3044974 (-)	753	WP_116758778.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
M5E07_RS14645 (M5E07_14645)	-	3045111..3045434 (-)	324	WP_016168405.1	pyrimidine/purine nucleoside phosphorylase	-
M5E07_RS14650 (M5E07_14650)	recN	3045763..3047424 (+)	1662	WP_252220340.1	DNA repair protein RecN	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32041.38 Da Isoelectric Point: 8.0536

                                >NTDB_id=697485 M5E07_RS14625 WP_252220334.1 3041793..3042653(+) (pilD) [Acinetobacter tibetensis strain Y-23]

MQDLLDYFIQNPTALYVAVGIFSLCIGSFLNVVIYRTPKMMEQEWHQDCQLLLHPEQAILDEKKLSLSQPASTCPKCKKP

IRWYQNIPVISWLVLRGKCGTCNNPISIRYPLVELLTAICALTVVAVYGPTLQMLFGLILTYTLIALTFIDFDTQLLPDR

YTLPLAALGLGINSYSIYTSPSVAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLLLPLIILLSSL

VGAIIGIILLKIRKENQPFAFGPYIAIAGWVAFLWGEQIMKVYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=697485 M5E07_RS14625 WP_252220334.1 3041793..3042653(+) (pilD) [Acinetobacter tibetensis strain Y-23]

ATGCAAGATTTACTCGATTATTTTATTCAAAACCCAACTGCACTTTATGTCGCAGTTGGGATTTTTAGTTTATGCATTGG

TAGTTTTTTAAACGTTGTCATTTATCGCACTCCCAAAATGATGGAGCAAGAATGGCATCAAGACTGTCAACTACTCTTAC

ATCCTGAACAAGCCATTTTGGATGAGAAAAAACTCAGTCTCAGCCAGCCAGCTTCAACCTGTCCGAAATGTAAGAAACCT

ATTCGTTGGTATCAGAATATTCCTGTCATTAGCTGGTTAGTATTACGTGGTAAATGTGGAACCTGTAACAATCCCATCAG

TATTCGCTATCCTTTGGTTGAATTACTGACTGCCATCTGTGCTTTGACAGTCGTCGCGGTCTATGGTCCCACCTTACAAA

TGTTGTTTGGTTTGATTCTCACCTATACATTAATCGCACTAACATTTATTGATTTCGATACCCAACTTTTACCTGATCGT

TATACCTTGCCATTGGCAGCTTTAGGACTGGGGATTAACAGCTATTCCATTTATACCTCTCCAAGTGTTGCTATTTGGGG

CTATATCATTGGTTTTCTTTGCCTTTGGATTGTGTATTACCTGTTTAAAATTATTACAGGTAAAGAAGGCATGGGCTATG

GTGACTTTAAATTACTGGCTGCTTTAGGGGCTTGGATGGGTCCGTTGCTGCTACCATTGATCATATTACTGTCTTCACTG

GTCGGTGCGATCATCGGAATTATTCTGCTTAAAATCCGTAAAGAAAATCAACCTTTTGCTTTTGGCCCCTATATTGCCAT

CGCGGGTTGGGTTGCCTTTTTATGGGGTGAACAGATTATGAAAGTTTATCTAGGACAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	80.351	99.65	0.801
pilD	Acinetobacter nosocomialis M2	80.351	99.65	0.801
pilD	Vibrio campbellii strain DS40M4	52.113	99.301	0.517
pilD	Vibrio cholerae strain A1552	51.579	99.65	0.514
pilD	Neisseria gonorrhoeae MS11	45.29	96.503	0.437

Detailed information NTG0697485