Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDN13_RS16235 Genome accession   NZ_CP098480
Coordinates   3399732..3400958 (-) Length   408 a.a.
NCBI ID   WP_004656216.1    Uniprot ID   A0A653K663
Organism   Acinetobacter sp. C32I     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3394732..3405958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS16210 (NDN13_16205) - 3396056..3396382 (+) 327 WP_004876475.1 pyrimidine/purine nucleoside phosphorylase -
  NDN13_RS16215 (NDN13_16210) rlmB 3396575..3397321 (+) 747 WP_065343633.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NDN13_RS16220 (NDN13_16215) - 3397351..3398262 (+) 912 WP_251116196.1 DMT family transporter -
  NDN13_RS16225 (NDN13_16220) coaE 3398259..3398864 (-) 606 WP_251116197.1 dephospho-CoA kinase -
  NDN13_RS16230 (NDN13_16225) pilD 3398866..3399726 (-) 861 WP_251116198.1 A24 family peptidase Machinery gene
  NDN13_RS16235 (NDN13_16230) pilC 3399732..3400958 (-) 1227 WP_004656216.1 type II secretion system F family protein Machinery gene
  NDN13_RS16240 (NDN13_16235) pilB 3400983..3402695 (-) 1713 WP_251116199.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NDN13_RS16245 (NDN13_16240) tpiA 3403068..3403859 (+) 792 WP_251116200.1 triose-phosphate isomerase -
  NDN13_RS16250 (NDN13_16245) secG 3403872..3404201 (+) 330 WP_251116201.1 preprotein translocase subunit SecG -
  NDN13_RS16270 (NDN13_16265) rimP 3404829..3405353 (+) 525 WP_251116202.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44979.51 Da        Isoelectric Point: 9.8061

>NTDB_id=696173 NDN13_RS16235 WP_004656216.1 3399732..3400958(-) (pilC) [Acinetobacter sp. C32I]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVEMSKWMQEYWFILIIVIGAIIA
SFLEAKKRSKKFRDLLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=696173 NDN13_RS16235 WP_004656216.1 3399732..3400958(-) (pilC) [Acinetobacter sp. C32I]
ATGGCAGCTAAAAAAGCGCAAATGATGCCAACTTTTGCTTATGAAGGGGTCGACCGGAAAGGGGCAAAAATTAAAGGGGA
ATTACCAGCACGTAATATGGCTTTGGCTAAAGTCACACTGCGTAAACAAGGGGTAACCATCAAGAATATTCGGGAAAAAC
GTAAAAATATTCTCGAAGGCTTAATGAAGAAAAAAGTCACCACACTAGATATCACCATCTTCACTCGCCAATTGGCGACG
ATGATGAAAGCAGGTGTCCCCTTAGTTCAAGGCTTTGAAATTGTGGCTGAAGGACTTGAAAACCCTGCTATGCGTGAAGT
GGTACTGGGGATTAAAGGTGAGGTAGAAGGCGGTAATACTTTTGCTGGGGCCCTGAAAAAATATCCTCAATATTTTGATA
ACCTTTTTTGCTCTCTGGTGGAGTCTGGTGAACAATCTGGTGCACTTGAAACTATGCTGGATCGGGTCGCGATTTATAAA
GAGAAGAGTGAATTACTGAAACAGAAAATTAAAAAAGCCATGAAATACCCAATCACAGTCGTTGTGGTGGCTGTGATTGT
GACCATTATTTTGATGGTCAAAGTGGTTCCTGTCTTCCAAGATCTATTTAGCTCATTTGGTGCAGATCTGCCTGCATTTA
CTAAAATGGTGGTAGAAATGTCCAAATGGATGCAGGAATACTGGTTTATTCTGATTATTGTGATTGGCGCCATTATTGCA
TCTTTTCTTGAAGCAAAAAAACGGAGTAAAAAATTCCGCGACTTATTAGATAAAATGGCCCTTAAAGCACCCATCTTTGG
AGATTTGGTCTATAAAGCGATTATTGCACGTTATAGTCGTACCCTAGCCACAACCTTTGCCGCTGGTGTTCCCCTGATTG
ATGCACTTGAATCAACTGCGGGAGCCACCAATAATGTCATTTATGAAGAAGCCGTGATGAAAATCCGTGAAGATGTCGCA
ACGGGTCAACAACTACAGTTTGCGATGCGTGTTTCAAACCGTTTCCCTTCGATGGCCATTCAGATGGTCGCGATTGGTGA
AGAGTCAGGTGCTTTAGACAGTATGCTTGATAAAGTCGCGACACATTATGAAAATGAAGTGGACAATGCCGTTGATGGCT
TAACCTCGATGATGGAACCTTTAATCATGGCAATTCTTGGTGTTTTAGTCGGTGGTCTAGTGATTGCCATGTACTTACCA
ATCTTCCAAATGGGTTCTGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653K663

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

93.382

100

0.934
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

60.934

99.755

0.608
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404