Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NDN13_RS16230 Genome accession   NZ_CP098480
Coordinates   3398866..3399726 (-) Length   286 a.a.
NCBI ID   WP_251116198.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3393866..3404726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS16205 (NDN13_16200) recN 3393999..3395657 (-) 1659 WP_251116195.1 DNA repair protein RecN -
  NDN13_RS16210 (NDN13_16205) - 3396056..3396382 (+) 327 WP_004876475.1 pyrimidine/purine nucleoside phosphorylase -
  NDN13_RS16215 (NDN13_16210) rlmB 3396575..3397321 (+) 747 WP_065343633.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NDN13_RS16220 (NDN13_16215) - 3397351..3398262 (+) 912 WP_251116196.1 DMT family transporter -
  NDN13_RS16225 (NDN13_16220) coaE 3398259..3398864 (-) 606 WP_251116197.1 dephospho-CoA kinase -
  NDN13_RS16230 (NDN13_16225) pilD 3398866..3399726 (-) 861 WP_251116198.1 A24 family peptidase Machinery gene
  NDN13_RS16235 (NDN13_16230) pilC 3399732..3400958 (-) 1227 WP_004656216.1 type II secretion system F family protein Machinery gene
  NDN13_RS16240 (NDN13_16235) pilB 3400983..3402695 (-) 1713 WP_251116199.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NDN13_RS16245 (NDN13_16240) tpiA 3403068..3403859 (+) 792 WP_251116200.1 triose-phosphate isomerase -
  NDN13_RS16250 (NDN13_16245) secG 3403872..3404201 (+) 330 WP_251116201.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32011.33 Da        Isoelectric Point: 6.8233

>NTDB_id=696172 NDN13_RS16230 WP_251116198.1 3398866..3399726(-) (pilD) [Acinetobacter sp. C32I]
MQQFFSYFIENPTALYLAVGLFSLCIGSFLNVVIFRTPRMMEQEWQQECQMLLHPEQPIIDQSKLTLSQPASTCPKCDSP
IRWYQNIPVISWLVLRGKCGTCQNPISIRYPFIELLTMLCSLVVLAVFGATIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINSYAIYTTATAAIWGYLIGFLCLWIVYYIFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSM
LGAIIGIILIKVRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=696172 NDN13_RS16230 WP_251116198.1 3398866..3399726(-) (pilD) [Acinetobacter sp. C32I]
ATGCAACAATTTTTTTCTTACTTTATTGAAAACCCAACTGCACTTTATCTTGCAGTTGGGCTTTTTAGTTTATGCATCGG
CAGTTTTTTAAATGTTGTTATTTTCCGCACCCCTCGCATGATGGAACAGGAATGGCAGCAAGAATGTCAAATGTTGTTAC
ACCCAGAACAACCCATTATTGATCAGAGTAAACTAACCTTAAGCCAACCAGCCTCAACCTGTCCGAAATGTGACTCGCCA
ATTCGTTGGTATCAAAATATCCCCGTGATTAGCTGGTTAGTACTGCGTGGTAAATGTGGGACTTGCCAAAATCCAATTAG
TATTCGCTATCCGTTCATTGAACTGTTGACCATGCTCTGCTCTTTGGTTGTTCTTGCCGTATTCGGTGCTACCATACAAA
TGCTATTTGGTTTAGTCCTTACGTGGGTATTGATTGCATTAACCTTTATTGATTTTGATACTCAACTGCTGCCTGACCGC
TTTACCCTGCCCTTAGCTGCTTTAGGCCTCGGTATTAATAGCTATGCGATTTACACGACAGCGACCGCCGCAATTTGGGG
TTATCTCATTGGTTTCCTCTGCCTCTGGATTGTGTACTACATCTTTAAATTAGTAACAGGCAAAGAAGGTATGGGCTATG
GTGATTTCAAACTCCTCGCCGCCTTAGGCGCTTGGATGGGACCTCTCATGCTGCCGTTAATTGTGCTACTCTCGTCAATG
CTGGGTGCGATCATTGGTATTATCTTGATAAAAGTGCGCGGTGAAAATCAGCCTTTTGCATTTGGCCCATATATCGCCAT
TGCAGGCTGGATTGCCTTTTTATGGGGTGATCAAATTATGAAAGTCTATCTAGGTGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

84.965

100

0.85
  pilD Acinetobacter baumannii D1279779

84.266

100

0.843
  pilD Vibrio cholerae strain A1552

54.104

93.706

0.507
  pilD Vibrio campbellii strain DS40M4

51.88

93.007

0.483
  pilD Neisseria gonorrhoeae MS11

46.52

95.455

0.444