Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDN12_RS16330 Genome accession   NZ_CP098479
Coordinates   3572276..3573505 (+) Length   409 a.a.
NCBI ID   WP_251110238.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3567276..3578505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS16295 (NDN12_16290) rimP 3567879..3568403 (-) 525 WP_005154900.1 ribosome maturation factor RimP -
  NDN12_RS16315 (NDN12_16310) secG 3569033..3569362 (-) 330 WP_167250335.1 preprotein translocase subunit SecG -
  NDN12_RS16320 (NDN12_16315) tpiA 3569375..3570166 (-) 792 WP_251110236.1 triose-phosphate isomerase -
  NDN12_RS16325 (NDN12_16320) pilB 3570539..3572251 (+) 1713 WP_251110237.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NDN12_RS16330 (NDN12_16325) pilC 3572276..3573505 (+) 1230 WP_251110238.1 type II secretion system F family protein Machinery gene
  NDN12_RS16335 (NDN12_16330) pilD 3573518..3574378 (+) 861 WP_251110239.1 A24 family peptidase Machinery gene
  NDN12_RS16340 (NDN12_16335) coaE 3574380..3574985 (+) 606 WP_251110240.1 dephospho-CoA kinase -
  NDN12_RS16345 (NDN12_16340) - 3574982..3575893 (-) 912 WP_251110241.1 DMT family transporter -
  NDN12_RS16350 (NDN12_16345) rlmB 3575923..3576669 (-) 747 WP_004656224.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NDN12_RS16355 (NDN12_16350) - 3576870..3577196 (-) 327 WP_004802302.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45066.59 Da        Isoelectric Point: 9.8061

>NTDB_id=696127 NDN12_RS16330 WP_251110238.1 3572276..3573505(+) (pilC) [Acinetobacter sp. C26G]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVEMSKWMQEYWFILIIVIGAIIA
SFLEAKKRSKKFRDLLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRISNRFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=696127 NDN12_RS16330 WP_251110238.1 3572276..3573505(+) (pilC) [Acinetobacter sp. C26G]
ATGGCAGCTAAAAAAGCGCAAATGATGCCAACTTTTGCTTATGAAGGGGTCGACCGGAAAGGGGCAAAAATTAAAGGGGA
ATTACCAGCACGTAATATGGCTTTGGCTAAAGTTACTCTGCGTAAACAAGGGGTGACCATTAAGAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTGATGAAGAAAAAAGTGACAACACTGGATATCACCATTTTCACCCGTCAATTGGCAACC
ATGATGAAAGCAGGTGTTCCTTTGGTTCAAGGCTTTGAAATCGTAGCCGAGGGACTTGAAAATCCATCTATGCGTGAAGT
GGTACTCGGTATTAAAGGTGAGGTCGAAGGGGGTAATACCTTTGCTGGTGCTTTGAAAAAATATCCACAGTATTTTGACA
ACCTATTTTGCTCTTTGGTTGAATCGGGTGAACAGTCTGGTGCACTTGAAACCATGCTTGATCGCGTCGCTATCTATAAA
GAAAAGAGTGAGTTACTCAAGCAAAAAATTAAAAAAGCCATGAAATATCCAATCACAGTCGTTGTGGTTGCAGTGATTGT
CACCATTATTTTGATGGTCAAAGTAGTCCCAGTTTTCCAAGACTTGTTTAGCTCATTTGGCGCAGACCTCCCCGCTTTTA
CCAAAATGGTCGTAGAAATGTCCAAGTGGATGCAAGAATATTGGTTTATTCTGATTATTGTGATTGGTGCAATTATTGCT
TCCTTCCTTGAAGCTAAAAAACGCAGTAAGAAATTCCGTGATTTGTTAGATAAAATGGCACTCAAAGCACCTATTTTTGG
GGACTTGGTCTATAAAGCGATTATTGCACGTTATAGTCGCACACTTGCGACCACCTTTGCAGCTGGTGTACCACTGATTG
ATGCACTTGAATCGACTGCTGGCGCAACCAATAACGTCATTTATGAAGAAGCAGTGATGAAAATTCGTGAAGACGTCGCC
ACTGGTCAACAACTACAATTTGCAATGCGTATTTCTAACCGTTTTCCTTCTATGGCAATCCAAATGGTCGCGATTGGTGA
AGAATCTGGTGCTTTAGACAGTATGCTTGATAAAGTTGCCACTCATTATGAAAATGAAGTGGACAATGCAGTGGATGGCT
TAACGTCTATGATGGAACCTTTAATCATGGCGATTCTTGGTGTGCTAGTGGGTGGCCTGGTGATTGCGATGTATTTACCA
ATCTTCCAAATGGGCTCAGTTGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

93.382

99.756

0.932
  pilC Acinetobacter baylyi ADP1

84.804

99.756

0.846
  pilC Pseudomonas stutzeri DSM 10701

60.934

99.511

0.606
  pilC Legionella pneumophila strain ERS1305867

53.827

99.022

0.533
  pilG Neisseria meningitidis 44/76-A

46.482

97.311

0.452
  pilG Neisseria gonorrhoeae MS11

46.482

97.311

0.452
  pilC Vibrio cholerae strain A1552

42.402

99.756

0.423
  pilC Vibrio campbellii strain DS40M4

40.488

100

0.406