Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NDN12_RS16335 Genome accession   NZ_CP098479
Coordinates   3573518..3574378 (+) Length   286 a.a.
NCBI ID   WP_251110239.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3568518..3579378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS16315 (NDN12_16310) secG 3569033..3569362 (-) 330 WP_167250335.1 preprotein translocase subunit SecG -
  NDN12_RS16320 (NDN12_16315) tpiA 3569375..3570166 (-) 792 WP_251110236.1 triose-phosphate isomerase -
  NDN12_RS16325 (NDN12_16320) pilB 3570539..3572251 (+) 1713 WP_251110237.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NDN12_RS16330 (NDN12_16325) pilC 3572276..3573505 (+) 1230 WP_251110238.1 type II secretion system F family protein Machinery gene
  NDN12_RS16335 (NDN12_16330) pilD 3573518..3574378 (+) 861 WP_251110239.1 A24 family peptidase Machinery gene
  NDN12_RS16340 (NDN12_16335) coaE 3574380..3574985 (+) 606 WP_251110240.1 dephospho-CoA kinase -
  NDN12_RS16345 (NDN12_16340) - 3574982..3575893 (-) 912 WP_251110241.1 DMT family transporter -
  NDN12_RS16350 (NDN12_16345) rlmB 3575923..3576669 (-) 747 WP_004656224.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NDN12_RS16355 (NDN12_16350) - 3576870..3577196 (-) 327 WP_004802302.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31946.16 Da        Isoelectric Point: 6.8233

>NTDB_id=696128 NDN12_RS16335 WP_251110239.1 3573518..3574378(+) (pilD) [Acinetobacter sp. C26G]
MQSLFSYFIENPTALYFAVGLFSLCIGSFLNVVIFRTPRMMEQEWQQECQMLLHPEQTIIDQSKLSLSQPASTCPKCDST
IRWYQNIPVISWILLRGKCGACQNSISIRYPLIELLTMTCSLIVVAVFGATVQMLFGLILTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINSYAIYTTASAAIWGYLIGFLCLWTVYYIFKLITGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSM
LGAIIGIILMKMRGENQPFAFGPYIAIAGWVAFLWGDQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=696128 NDN12_RS16335 WP_251110239.1 3573518..3574378(+) (pilD) [Acinetobacter sp. C26G]
ATGCAATCTTTATTTTCTTATTTTATCGAAAACCCAACTGCACTTTATTTTGCAGTTGGGCTTTTTAGTTTATGTATTGG
CAGCTTTTTAAATGTTGTCATTTTTCGCACACCTCGAATGATGGAACAGGAATGGCAGCAAGAATGCCAGATGTTGCTCC
ATCCTGAGCAAACGATTATAGATCAAAGCAAACTCAGCTTAAGCCAACCTGCCTCCACCTGCCCTAAATGTGATTCAACC
ATTCGTTGGTATCAAAATATCCCTGTGATCAGTTGGATATTGCTTCGTGGTAAATGTGGGGCTTGTCAGAATTCAATTAG
TATCCGTTATCCACTGATTGAATTACTCACCATGACCTGTTCGTTGATTGTGGTAGCTGTATTTGGTGCAACCGTACAAA
TGCTATTTGGCTTAATCTTAACTTGGGTTTTGATCACACTAACCTTTATTGATTTTGATACACAGTTGCTGCCTGATCGT
TTTACCCTGCCCCTAGCCGCTTTAGGTTTAGGGATTAATAGCTATGCCATTTACACCACAGCCAGTGCGGCAATCTGGGG
TTATTTGATTGGCTTCCTTTGTCTCTGGACTGTTTATTACATCTTTAAGCTAATTACAGGCAAGGAAGGTATGGGGTATG
GCGACTTCAAACTACTTGCCGCATTAGGCGCTTGGATGGGTCCAATGCTACTGCCTTTAATTGTACTACTCTCTTCAATG
CTTGGTGCAATTATTGGTATTATCTTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGTCCTTATATTGCGAT
TGCAGGTTGGGTTGCATTTTTATGGGGTGATCAGATTATGAAAGTTTATCTTGGTGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

81.119

100

0.811
  pilD Acinetobacter baumannii D1279779

80.42

100

0.804
  pilD Vibrio campbellii strain DS40M4

51.504

93.007

0.479
  pilD Vibrio cholerae strain A1552

51.311

93.357

0.479
  pilD Neisseria gonorrhoeae MS11

46.642

93.706

0.437