Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NCG89_RS05660 Genome accession   NZ_CP098455
Coordinates   1220197..1221414 (+) Length   405 a.a.
NCBI ID   WP_251088794.1    Uniprot ID   -
Organism   Spongiibacter taiwanensis strain SPT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1215197..1226414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCG89_RS05640 (NCG89_05640) - 1215659..1217560 (-) 1902 WP_251088792.1 hypothetical protein -
  NCG89_RS05645 (NCG89_05645) - 1217723..1218166 (-) 444 WP_285236394.1 pilin -
  NCG89_RS05655 (NCG89_05655) pilB 1218475..1220193 (+) 1719 WP_251088793.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NCG89_RS05660 (NCG89_05660) pilC 1220197..1221414 (+) 1218 WP_251088794.1 type II secretion system F family protein Machinery gene
  NCG89_RS05665 (NCG89_05665) pilD 1221451..1222320 (+) 870 WP_285236395.1 A24 family peptidase Machinery gene
  NCG89_RS05670 (NCG89_05670) coaE 1222335..1222937 (+) 603 WP_251088795.1 dephospho-CoA kinase -
  NCG89_RS05675 (NCG89_05675) - 1222930..1223139 (+) 210 WP_251088796.1 DNA gyrase inhibitor YacG -
  NCG89_RS05680 (NCG89_05680) mutT 1223232..1223669 (-) 438 WP_251088797.1 8-oxo-dGTP diphosphatase MutT -
  NCG89_RS05685 (NCG89_05685) argJ 1223650..1224870 (-) 1221 WP_251088798.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43944.48 Da        Isoelectric Point: 9.7585

>NTDB_id=695601 NCG89_RS05660 WP_251088794.1 1220197..1221414(+) (pilC) [Spongiibacter taiwanensis strain SPT1]
MATAASKTEVFVWHGVDKQGRKTRGELTAPSAALVKAQLRKQGIVTKQVKRKPKPLFSSKKAIKPEDIAIFTRQMATMLK
AGVPLVQSFDIVAEGAANPTMQDLVNEIKNDVASGGGFAAACAKHPKYFDDLFCSLVESGEQSGTLEVMLDRVATYKEKT
EALKKKIKKALTYPAAVIVVAIVVTAILLIKVVPQFASTFQSFGSDLPAFTKFVVFLSEWAQANWFIALGVMIAAGFSFK
EARRRSKRFSDWVDKMSLKIPVVGDIIYNSVIARFSRTLATTFAAGVPLVDALNSVAGAAGNAVYYKAIIQIRDDVTTGQ
TLYSSIRFTNLFPTMLLQMVSIGEESGSLDDMLDKVATHFEEAVDNAVDTLTALLEPFIMSILGVLVGGLMIAMYLPIFM
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=695601 NCG89_RS05660 WP_251088794.1 1220197..1221414(+) (pilC) [Spongiibacter taiwanensis strain SPT1]
ATGGCGACCGCAGCGTCAAAGACGGAAGTTTTTGTATGGCATGGAGTGGACAAACAGGGTAGGAAAACCCGTGGAGAATT
AACCGCCCCCTCTGCCGCGCTCGTCAAGGCGCAGCTGCGCAAGCAGGGCATTGTCACCAAGCAAGTCAAGCGAAAGCCAA
AGCCCTTATTCAGTAGCAAGAAAGCCATCAAGCCGGAGGATATTGCGATCTTCACCCGGCAGATGGCCACCATGCTGAAA
GCCGGTGTGCCGTTGGTGCAAAGCTTCGATATCGTTGCCGAGGGCGCTGCCAATCCCACGATGCAGGATTTGGTCAACGA
AATTAAAAATGATGTGGCCTCTGGGGGCGGATTTGCCGCCGCCTGTGCCAAGCACCCAAAATATTTTGACGACCTCTTTT
GCAGCCTAGTCGAGTCCGGCGAACAGTCGGGTACCCTGGAGGTGATGCTGGATCGGGTTGCCACTTACAAAGAAAAGACA
GAAGCACTCAAAAAGAAAATCAAGAAAGCCCTGACTTATCCAGCAGCGGTGATCGTCGTTGCGATTGTCGTTACGGCAAT
CCTGTTAATCAAAGTCGTTCCCCAATTTGCCAGTACCTTCCAAAGCTTTGGGTCGGATCTGCCGGCCTTTACCAAATTTG
TTGTTTTCCTATCTGAGTGGGCTCAAGCCAACTGGTTTATTGCTCTGGGTGTGATGATTGCCGCGGGCTTCTCATTTAAA
GAGGCTCGACGGCGTTCGAAGCGCTTCTCCGACTGGGTCGATAAAATGTCGCTCAAGATTCCCGTGGTCGGCGATATTAT
CTACAACTCGGTTATTGCTCGCTTCTCGCGCACCTTGGCAACCACCTTTGCGGCCGGTGTCCCCTTGGTAGATGCGCTGA
ATTCCGTCGCTGGCGCGGCAGGCAATGCCGTCTACTACAAGGCCATTATTCAAATCCGGGACGACGTGACCACCGGTCAA
ACCCTGTACTCCTCCATTCGCTTTACCAATCTCTTTCCCACCATGCTGCTGCAGATGGTCTCCATCGGTGAAGAATCCGG
CTCTCTGGACGACATGCTCGACAAAGTGGCCACTCACTTTGAGGAGGCGGTGGATAACGCCGTCGATACGCTAACCGCGC
TACTCGAGCCCTTCATTATGTCGATTCTGGGGGTATTGGTCGGCGGCCTGATGATCGCCATGTACCTGCCGATCTTTATG
CTGGGTTCCGCGATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

61.671

100

0.62
  pilC Pseudomonas stutzeri DSM 10701

61.975

100

0.62
  pilC Acinetobacter baumannii D1279779

60.202

98.025

0.59
  pilC Legionella pneumophila strain ERS1305867

56.566

97.778

0.553
  pilG Neisseria gonorrhoeae MS11

45.946

100

0.462
  pilG Neisseria meningitidis 44/76-A

45.946

100

0.462
  pilC Vibrio campbellii strain DS40M4

41.667

100

0.42
  pilC Vibrio cholerae strain A1552

42.172

97.778

0.412