Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NCG89_RS05665 Genome accession   NZ_CP098455
Coordinates   1221451..1222320 (+) Length   289 a.a.
NCBI ID   WP_285236395.1    Uniprot ID   -
Organism   Spongiibacter taiwanensis strain SPT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1216451..1227320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCG89_RS05645 (NCG89_05645) - 1217723..1218166 (-) 444 WP_285236394.1 pilin -
  NCG89_RS05655 (NCG89_05655) pilB 1218475..1220193 (+) 1719 WP_251088793.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NCG89_RS05660 (NCG89_05660) pilC 1220197..1221414 (+) 1218 WP_251088794.1 type II secretion system F family protein Machinery gene
  NCG89_RS05665 (NCG89_05665) pilD 1221451..1222320 (+) 870 WP_285236395.1 A24 family peptidase Machinery gene
  NCG89_RS05670 (NCG89_05670) coaE 1222335..1222937 (+) 603 WP_251088795.1 dephospho-CoA kinase -
  NCG89_RS05675 (NCG89_05675) - 1222930..1223139 (+) 210 WP_251088796.1 DNA gyrase inhibitor YacG -
  NCG89_RS05680 (NCG89_05680) mutT 1223232..1223669 (-) 438 WP_251088797.1 8-oxo-dGTP diphosphatase MutT -
  NCG89_RS05685 (NCG89_05685) argJ 1223650..1224870 (-) 1221 WP_251088798.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31864.95 Da        Isoelectric Point: 8.3337

>NTDB_id=695602 NCG89_RS05665 WP_285236395.1 1221451..1222320(+) (pilD) [Spongiibacter taiwanensis strain SPT1]
MTILQLADSQPFIFLAIVAIFALMFGSFFNVVIYRLPKIMEQSWQQECRLLLELPAQDEKPFSLSKPNSHCPSCKSPVKV
WQNIPIVSFLMLKGRCGNCKTAISWRYPAIELTTAALAVFAIAHFGATPQGVAVVLFSWLLLIMSMIDMDHQLLPDQLTL
PLLWLGLAFHAFTGTLPLADAVWGAIFGYLVLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPLIIILSSLVGA
VLGAISLSLAGKGRGQTIPFGPYLAAAGWIAMFWGDQIVSSYLQFAGFK

Nucleotide


Download         Length: 870 bp        

>NTDB_id=695602 NCG89_RS05665 WP_285236395.1 1221451..1222320(+) (pilD) [Spongiibacter taiwanensis strain SPT1]
ATGACCATTCTGCAACTGGCAGACAGCCAGCCCTTTATCTTTCTGGCCATTGTCGCCATTTTTGCGCTGATGTTTGGCAG
CTTTTTTAATGTGGTGATTTACCGCCTGCCGAAAATCATGGAACAAAGCTGGCAGCAAGAGTGTAGATTGCTACTGGAGC
TGCCAGCCCAGGACGAAAAACCCTTCAGCCTGAGCAAGCCCAACTCCCACTGCCCTAGCTGCAAAAGCCCCGTTAAGGTT
TGGCAAAACATCCCAATTGTCAGTTTCCTCATGCTGAAAGGTCGCTGTGGGAACTGCAAGACAGCGATCAGCTGGCGCTA
TCCCGCCATCGAGTTGACGACCGCAGCGCTGGCAGTGTTCGCGATTGCCCATTTCGGTGCCACACCCCAGGGGGTTGCCG
TGGTGCTGTTCAGTTGGCTTTTGCTGATCATGTCGATGATCGATATGGACCACCAACTGCTGCCCGACCAACTTACTTTA
CCCCTGCTCTGGCTCGGCCTGGCCTTCCACGCATTCACCGGCACCTTGCCCTTGGCGGATGCGGTTTGGGGCGCCATTTT
TGGCTACCTGGTGCTGTGGTCTGTTTACTGGCTGTTCAAGTTGCTGACCGGCAAAGAAGGCATGGGCTACGGCGACTTCA
AGTTGCTCGCGGCCCTCGGCGCCTGGCTCGGCTGGCAGCAGTTGCCGCTGATTATTATTTTATCCTCGCTGGTGGGTGCG
GTGCTCGGCGCCATCAGCCTGAGCCTTGCGGGCAAGGGGCGCGGCCAGACCATTCCCTTCGGCCCCTACCTGGCCGCCGC
GGGATGGATTGCCATGTTCTGGGGCGATCAAATCGTCTCCAGCTACCTCCAGTTTGCCGGCTTTAAATAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-243)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.676

96.194

0.526
  pilD Vibrio campbellii strain DS40M4

52.281

98.616

0.516
  pilD Acinetobacter baumannii D1279779

52.985

92.734

0.491
  pilD Acinetobacter nosocomialis M2

52.985

92.734

0.491
  pilD Neisseria gonorrhoeae MS11

46.591

91.349

0.426