Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NCL52_RS15895 Genome accession   NZ_CP098417
Coordinates   3082941..3083585 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3077941..3088585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS15860 (NCL52_15860) mrpB 3079133..3079564 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NCL52_RS15865 (NCL52_15865) mrpC 3079564..3079905 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NCL52_RS15870 (NCL52_15870) mrpD 3079898..3081379 (+) 1482 WP_128738179.1 Na+/H+ antiporter subunit D -
  NCL52_RS15875 (NCL52_15875) mrpE 3081385..3081861 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NCL52_RS15880 (NCL52_15880) mrpF 3081861..3082145 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NCL52_RS15885 (NCL52_15885) mnhG 3082129..3082503 (+) 375 WP_128738180.1 monovalent cation/H(+) antiporter subunit G -
  NCL52_RS15890 (NCL52_15890) yuxO 3082542..3082922 (-) 381 WP_071579112.1 hotdog fold thioesterase -
  NCL52_RS15895 (NCL52_15895) comA 3082941..3083585 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NCL52_RS15900 (NCL52_15900) - 3083666..3085978 (-) 2313 Protein_3074 histidine kinase -
  NCL52_RS15905 (NCL52_15905) comX 3085994..3086215 (-) 222 WP_134982027.1 competence pheromone ComX -
  NCL52_RS15910 (NCL52_15910) - 3086212..3087081 (-) 870 WP_251107045.1 polyprenyl synthetase family protein -
  NCL52_RS15915 (NCL52_15915) degQ 3087266..3087406 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NCL52_RS15920 (NCL52_15920) - 3087628..3087753 (+) 126 WP_128473219.1 hypothetical protein -
  NCL52_RS15925 (NCL52_15925) - 3087869..3088237 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=695404 NCL52_RS15895 WP_003220716.1 3082941..3083585(-) (comA) [Bacillus subtilis strain N2-10]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=695404 NCL52_RS15895 WP_003220716.1 3082941..3083585(-) (comA) [Bacillus subtilis strain N2-10]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1