Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SR187_RS00870 Genome accession   NZ_AP018400
Coordinates   135410..135805 (+) Length   131 a.a.
NCBI ID   WP_120171216.1    Uniprot ID   A0A2Z5TK68
Organism   Streptococcus ruminantium strain GUT-187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 130410..140805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR187_RS00845 (SR187_0870) pepA 131931..132992 (-) 1062 WP_120171212.1 glutamyl aminopeptidase -
  SR187_RS00850 (SR187_0875) - 133231..133515 (+) 285 WP_120171213.1 DUF4651 domain-containing protein -
  SR187_RS00855 (SR187_0880) - 133512..133832 (+) 321 WP_024532243.1 thioredoxin family protein -
  SR187_RS00860 (SR187_0885) ytpR 133908..134531 (+) 624 WP_120171214.1 YtpR family tRNA-binding protein -
  SR187_RS00865 (SR187_0890) - 134566..135345 (-) 780 WP_120171215.1 DUF2785 domain-containing protein -
  SR187_RS00870 (SR187_0895) ssbA 135410..135805 (+) 396 WP_120171216.1 single-stranded DNA-binding protein Machinery gene
  SR187_RS00875 (SR187_0900) - 135889..136140 (-) 252 WP_120171217.1 hypothetical protein -
  SR187_RS00880 (SR187_0905) groES 136351..136632 (+) 282 WP_024532238.1 co-chaperone GroES -
  SR187_RS00885 (SR187_0910) groL 136741..138363 (+) 1623 WP_024532237.1 chaperonin GroEL -
  SR187_RS00890 (SR187_0915) rpsL 138634..139047 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  SR187_RS00895 (SR187_0920) rpsG 139064..139534 (+) 471 WP_024532236.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14884.82 Da        Isoelectric Point: 5.3058

>NTDB_id=69434 SR187_RS00870 WP_120171216.1 135410..135805(+) (ssbA) [Streptococcus ruminantium strain GUT-187]
MYNKTIVIGRLTAQPELTQTSTGKKLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQTFQLLESRAQRAMRENNVGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=69434 SR187_RS00870 WP_120171216.1 135410..135805(+) (ssbA) [Streptococcus ruminantium strain GUT-187]
ATGTATAATAAAACTATTGTGATTGGTCGCTTGACGGCTCAACCTGAATTGACCCAGACATCCACCGGGAAAAAACTGAC
CCGTGTAACGATTGCAGTCAACAGACGTTTCAAGACGGAGAATGGTGAACGTGAGGCGGATTTCCTCAATGTGATTTTCT
GGGGGAAATTGGCGGAAACGCTTGTTTCCTACGGAAGTAAAGGAAGTCTGATTTCTATTGATGGAGAATTGCGAACTCGA
AAATACGAAAAAGACGGAAGCAACCACTATGTGACCGAAATCTTGGGTCAGACCTTCCAACTGTTAGAAAGCCGAGCTCA
ACGTGCCATGCGTGAAAATAATGTAGGTGATGATCTTGCAGATCTAGTTTTAGAAGAGGAAGAATTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5TK68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382

Multiple sequence alignment