Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M8T91_RS11910 Genome accession   NZ_CP098023
Coordinates   2843994..2845208 (+) Length   404 a.a.
NCBI ID   WP_301414386.1    Uniprot ID   -
Organism   Microbulbifer sp. MI-G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2838994..2850208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8T91_RS11890 (M8T91_11865) - 2839044..2840012 (-) 969 WP_301414382.1 acyltransferase -
  M8T91_RS11895 (M8T91_11870) - 2840015..2841208 (-) 1194 WP_301414383.1 serine hydrolase -
  M8T91_RS11900 (M8T91_11875) - 2841286..2841753 (-) 468 WP_301414384.1 pilin -
  M8T91_RS11905 (M8T91_11880) pilB 2842133..2843842 (+) 1710 WP_301414385.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M8T91_RS11910 (M8T91_11885) pilC 2843994..2845208 (+) 1215 WP_301414386.1 type II secretion system F family protein Machinery gene
  M8T91_RS11915 (M8T91_11890) - 2845229..2846101 (+) 873 WP_301414387.1 A24 family peptidase -
  M8T91_RS11920 (M8T91_11895) coaE 2846177..2846779 (+) 603 WP_301414388.1 dephospho-CoA kinase -
  M8T91_RS11925 (M8T91_11900) - 2846836..2847051 (+) 216 WP_301419083.1 DNA gyrase inhibitor YacG -
  M8T91_RS11930 (M8T91_11905) mutT 2847083..2847496 (-) 414 WP_301419085.1 8-oxo-dGTP diphosphatase MutT -
  M8T91_RS18950 - 2847518..2847640 (-) 123 WP_367317771.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase -
  M8T91_RS11935 (M8T91_11910) argJ 2847721..2848788 (-) 1068 Protein_2374 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43426.18 Da        Isoelectric Point: 9.5858

>NTDB_id=693589 M8T91_RS11910 WP_301414386.1 2843994..2845208(+) (pilC) [Microbulbifer sp. MI-G]
MANATAVAYLYKGVDSKGAKVQGEISGTSAALVKAQLRKQGIIANRVQKKPKPLFGGGKKKVKPADIALFTRQMATMMKA
GVPLVQSFEIVADGLDNQGLKELIYKIRDDVASGTAFADALRKHPLHFDNLFCNLVASGEQSGALETMLDRIATYKEKTE
SLKAKIKKAMTYPIAVIVIAIIVTSILLIKVVPQFAETFSGFGADLPAFTLLVVSISEWMQANWFFALLVTVGLIGGLIE
AKKRNKRIAEAFDRLVLKLPILGNITYNSIAARFARTMSTTFAAGVPLIDALKSVAGATGNSIYEEATLKIRDSVATGIP
LNAAMRESGLYPVMLVQMTAIGEESGALDEMLSKAADFYEEAVDNLIDNLTTLLEPMIMAVLGVLVGGLMVAMYLPIFNL
GNVI

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=693589 M8T91_RS11910 WP_301414386.1 2843994..2845208(+) (pilC) [Microbulbifer sp. MI-G]
ATGGCCAACGCCACAGCGGTCGCCTACCTCTATAAAGGCGTGGATAGCAAAGGGGCCAAGGTCCAGGGGGAGATCAGCGG
CACCAGCGCGGCGCTGGTCAAGGCGCAATTGCGCAAGCAGGGCATTATCGCCAACCGCGTGCAGAAGAAACCGAAACCAC
TGTTCGGCGGCGGCAAGAAAAAAGTCAAGCCCGCGGATATCGCCCTGTTTACCCGCCAGATGGCTACCATGATGAAAGCA
GGGGTGCCGTTGGTCCAGAGCTTTGAGATCGTCGCCGATGGCCTGGATAACCAAGGCTTGAAAGAACTGATCTACAAGAT
TCGAGACGATGTGGCCTCGGGCACCGCCTTTGCCGATGCACTCCGTAAACACCCTCTTCATTTTGATAACCTATTTTGCA
ATCTTGTCGCTTCTGGTGAACAATCCGGTGCTCTGGAGACAATGCTGGATCGTATTGCCACCTATAAAGAAAAAACTGAG
TCTTTGAAAGCAAAAATCAAAAAGGCAATGACCTACCCCATTGCTGTTATTGTGATAGCAATTATTGTCACTTCAATTCT
ATTAATCAAAGTAGTCCCACAATTTGCCGAAACCTTTTCTGGTTTTGGAGCCGACCTTCCCGCCTTTACTCTTTTAGTCG
TAAGCATATCCGAGTGGATGCAAGCAAACTGGTTCTTTGCTTTACTTGTGACAGTTGGTCTTATAGGTGGATTAATTGAA
GCCAAAAAACGCAACAAACGCATCGCAGAAGCTTTTGACAGGCTTGTGCTCAAGCTGCCCATATTAGGCAATATCACATA
TAACTCTATTGCCGCTCGGTTTGCCCGTACCATGTCAACCACCTTTGCCGCCGGTGTCCCTCTAATTGATGCGCTTAAGT
CCGTTGCTGGAGCAACGGGAAATTCTATTTATGAGGAAGCAACGCTCAAAATCAGGGATTCTGTTGCCACTGGTATCCCC
CTCAACGCTGCCATGCGCGAGTCTGGCCTTTACCCAGTTATGTTAGTTCAGATGACAGCGATTGGTGAAGAGTCTGGTGC
TCTAGACGAAATGCTTTCTAAAGCCGCTGACTTTTATGAAGAAGCCGTAGACAATTTGATTGACAACCTCACCACCCTCC
TTGAACCTATGATCATGGCAGTTCTTGGAGTGCTGGTCGGTGGTCTGATGGTTGCCATGTACCTTCCAATTTTCAATCTT
GGAAATGTAATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.879

98.02

0.616
  pilC Acinetobacter baylyi ADP1

60.202

98.267

0.592
  pilC Acinetobacter baumannii D1279779

59.446

98.267

0.584
  pilC Legionella pneumophila strain ERS1305867

56.03

98.515

0.552
  pilG Neisseria gonorrhoeae MS11

43.467

98.515

0.428
  pilG Neisseria meningitidis 44/76-A

43.216

98.515

0.426
  pilC Vibrio cholerae strain A1552

42.172

98.02

0.413
  pilC Vibrio campbellii strain DS40M4

41.353

98.762

0.408
  pilC Thermus thermophilus HB27

36.165

100

0.369