Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NAF16_RS13925 Genome accession   NZ_CP098021
Coordinates   2945381..2946496 (-) Length   371 a.a.
NCBI ID   WP_323695201.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2940381..2951496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS13895 (NAF16_13870) hemF 2940939..2941853 (-) 915 WP_020332560.1 oxygen-dependent coproporphyrinogen oxidase -
  NAF16_RS13900 (NAF16_13875) - 2941873..2942430 (-) 558 WP_154183775.1 L-threonylcarbamoyladenylate synthase -
  NAF16_RS13905 (NAF16_13880) purE 2942628..2943113 (+) 486 WP_020332562.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  NAF16_RS13910 (NAF16_13885) - 2943117..2944250 (+) 1134 WP_199466074.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  NAF16_RS13915 (NAF16_13890) - 2944284..2944871 (-) 588 WP_323694866.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  NAF16_RS13920 (NAF16_13895) - 2944902..2945378 (-) 477 WP_020332565.1 DUF494 family protein -
  NAF16_RS13925 (NAF16_13900) dprA 2945381..2946496 (-) 1116 WP_323695201.1 DNA-processing protein DprA Machinery gene
  NAF16_RS13930 (NAF16_13905) - 2946496..2947614 (-) 1119 WP_222764317.1 LysM peptidoglycan-binding domain-containing protein -
  NAF16_RS13935 (NAF16_13910) def 2947754..2948266 (+) 513 WP_020332568.1 peptide deformylase -
  NAF16_RS13940 (NAF16_13915) fmt 2948285..2949232 (+) 948 WP_024374491.1 methionyl-tRNA formyltransferase -
  NAF16_RS13945 (NAF16_13920) rsmB 2949283..2950563 (+) 1281 WP_208563689.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40612.13 Da        Isoelectric Point: 6.1277

>NTDB_id=693567 NAF16_RS13925 WP_323695201.1 2945381..2946496(-) (dprA) [Vibrio fluvialis strain V13]
MLERDLAAWLAFSFTPQLGIRTLQRLASRYVLSDLKQHLNRDALAVGLKDNQIQYLQRQADQDVDACLRWSEQADNRHIL
TPFHAYYPSLLTEIAAAPPVLFVEGRIEALRAPQIAIVGSRNASIDSQQIAHQFATQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=693567 NAF16_RS13925 WP_323695201.1 2945381..2946496(-) (dprA) [Vibrio fluvialis strain V13]
ATGCTCGAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACACTGCAGCGTTTAGC
CAGTCGTTACGTGCTGTCTGACCTCAAACAACACCTGAATCGTGACGCCTTGGCCGTAGGGCTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGAGCAGGCTGATAATCGCCACATTCTG
ACGCCGTTTCATGCGTACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGAT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATTGTCGGCAGTCGCAACGCCAGTATCGACAGTCAGCAAATCGCTCATCAAT
TTGCCACGCAATTGGTCGAACACGGTTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGGCTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.69

100

0.647
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

47.074

100

0.477
  dprA Legionella pneumophila strain ERS1305867

43.407

98.113

0.426
  dprA Neisseria meningitidis strain C311

37.688

100

0.404
  dprA Neisseria meningitidis MC58

37.688

100

0.404
  dprA Haemophilus influenzae Rd KW20

43.713

90.027

0.394
  dprA Neisseria gonorrhoeae MS11

36.181

100

0.388
  dprA Acinetobacter baylyi ADP1

42.216

90.027

0.38
  dprA Neisseria gonorrhoeae strain FA1090

35.696

100

0.38