Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NAG75_RS12020 Genome accession   NZ_CP097873
Coordinates   2371109..2371393 (-) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GL-601     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2366109..2376393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS11995 - 2366603..2367817 (+) 1215 WP_005456922.1 pyridoxal phosphate-dependent aminotransferase -
  NAG75_RS12000 yfbR 2367908..2368492 (+) 585 WP_005482513.1 5'-deoxynucleotidase -
  NAG75_RS12005 - 2368505..2369839 (+) 1335 WP_044139060.1 anti-phage deoxyguanosine triphosphatase -
  NAG75_RS12010 - 2369849..2370463 (-) 615 WP_005482520.1 tRNA-uridine aminocarboxypropyltransferase -
  NAG75_RS12015 rrtA 2370467..2371018 (+) 552 WP_208893637.1 rhombosortase -
  NAG75_RS12020 comEA 2371109..2371393 (-) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  NAG75_RS12025 ppiD 2371544..2373403 (-) 1860 WP_005482527.1 peptidylprolyl isomerase -
  NAG75_RS12030 - 2373603..2373875 (-) 273 WP_005382341.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=693211 NAG75_RS12020 WP_021449594.1 2371109..2371393(-) (comEA) [Vibrio parahaemolyticus strain GL-601]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=693211 NAG75_RS12020 WP_021449594.1 2371109..2371393(-) (comEA) [Vibrio parahaemolyticus strain GL-601]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362