Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NAG75_RS03875 Genome accession   NZ_CP097873
Coordinates   631282..632505 (-) Length   407 a.a.
NCBI ID   WP_021822433.1    Uniprot ID   A0AA46L906
Organism   Vibrio parahaemolyticus strain GL-601     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 626282..637505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS03835 rpsP 626389..626637 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  NAG75_RS03840 rimM 626666..627214 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  NAG75_RS03845 trmD 627242..627985 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NAG75_RS03850 rplS 628027..628380 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  NAG75_RS03855 yacG 628702..628896 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  NAG75_RS03860 zapD 628965..629705 (-) 741 WP_015297254.1 cell division protein ZapD -
  NAG75_RS03865 coaE 629733..630347 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  NAG75_RS03870 pilD 630348..631217 (-) 870 WP_005493974.1 A24 family peptidase Machinery gene
  NAG75_RS03875 pilC 631282..632505 (-) 1224 WP_021822433.1 type II secretion system F family protein Machinery gene
  NAG75_RS03880 pilB 632529..634214 (-) 1686 WP_080607318.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NAG75_RS03885 - 634216..634668 (-) 453 WP_080607317.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NAG75_RS03890 nadC 634932..635819 (-) 888 WP_208893453.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NAG75_RS03895 ampD 635912..636463 (+) 552 WP_025523108.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45232.44 Da        Isoelectric Point: 10.4368

>NTDB_id=693200 NAG75_RS03875 WP_021822433.1 631282..632505(-) (pilC) [Vibrio parahaemolyticus strain GL-601]
MKITTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=693200 NAG75_RS03875 WP_021822433.1 631282..632505(-) (pilC) [Vibrio parahaemolyticus strain GL-601]
ATGAAAATTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

74.265

100

0.744
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398