Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LpnA194_RS11900 Genome accession   NZ_CP114578
Coordinates   2677760..2679115 (-) Length   451 a.a.
NCBI ID   WP_040146513.1    Uniprot ID   -
Organism   Legionella pneumophila strain A194     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2672760..2684115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS11885 (LpnA194_02386) pilU 2673500..2674621 (-) 1122 WP_027219258.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LpnA194_RS11890 (LpnA194_02387) - 2674711..2676639 (-) 1929 WP_040146511.1 L-gulono-gamma-lactone oxidase -
  LpnA194_RS11895 (LpnA194_02388) - 2676927..2677763 (-) 837 WP_011947169.1 phytanoyl-CoA dioxygenase family protein -
  LpnA194_RS11900 (LpnA194_02389) radA/sms 2677760..2679115 (-) 1356 WP_040146513.1 DNA repair protein RadA Machinery gene
  LpnA194_RS11905 (LpnA194_02390) - 2679348..2680226 (+) 879 WP_040146514.1 lpg2327 family Dot/Icm T4SS effector -
  LpnA194_RS11910 (LpnA194_02391) - 2680489..2680872 (+) 384 WP_011947172.1 hypothetical protein -
  LpnA194_RS11915 (LpnA194_02392) - 2681066..2681296 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  LpnA194_RS11920 (LpnA194_02393) - 2681277..2682173 (+) 897 WP_027219254.1 polyprenyl synthetase family protein -
  LpnA194_RS11925 (LpnA194_02394) bioC 2682217..2683071 (-) 855 WP_040146516.1 malonyl-ACP O-methyltransferase BioC -
  LpnA194_RS11930 (LpnA194_02395) comFC 2683115..2683819 (+) 705 WP_013101755.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49015.71 Da        Isoelectric Point: 7.7495

>NTDB_id=693201 LpnA194_RS11900 WP_040146513.1 2677760..2679115(-) (radA/sms) [Legionella pneumophila strain A194]
MMKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGLVPENKTLRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNR
VLGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQA
QKEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQ
NDSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPEPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQA
KRVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDSETIIFGEVGLAGEI
RPVQSGQERIKEAIKHGFKRAIVPFANAPKQQLDSMTVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=693201 LpnA194_RS11900 WP_040146513.1 2677760..2679115(-) (radA/sms) [Legionella pneumophila strain A194]
ATTATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCCATTTTTAAACAGTGGGCAGGACAATGCACTCAATG
TGGCGCCTGGAATTCCATTGTTGAAGAAGGGCTTGTGCCTGAAAACAAGACTTTACGAAGTGGGCAATGGGCTAATCAGC
GCTCTGTCATCACTGCTGTTGAAGACGTCGTCATGGACAAAATAGTGCGTATGGATTGTGGTATATCCGAGCTCAACCGG
GTTTTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGGGATCCGGGGATCGGTAAATCCACCTTACTGTT
GCAAACGCTAGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAATCATTACAACAAGTTGCCATGC
GTGCCCAAAGATTGGGACTACCTTTGGCCGGATTGCGGCTATTGGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCC
CAAAAGGAAAAACCACGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGG
AGTTAGTCAAGTCAGGGAATCGGCAGCACAATTGGTGCGTTATGCCAAGATGACCAATACGGCCATCTTCCTGGTTGGGC
ATGTCACCAAGGAAGGAACATTAGCCGGGCCTCGGGTGTTAGAACATATGGTTGATAGTGTTCTCTATTTTGAAGGACAA
AATGATAGCCGCTTCAGAGTCATTCGTGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTAGGTGTATTTGCGATGAC
TGACAAAGGCCTGAAGGAGGTAGCCAACCCCTCAGCTATTTTTTTATCTCGCCAGCCTGAACCTACGCCTGGCAGTGCAG
TGATGGTGACTTGGGAAGGATCAAGACCTATGTTGGTAGAAGTACAAGCATTGGTTGATGAGGCCCACGGTCAGCAAGCG
AAACGCGTTACTGCGGGTCTTGAGCATAATCGTCTGGCCATTTTGTTAGCTGTTTTACACCGTCATGGAGGTATCGCTAC
TTACGATCAGGATGTTTTTATCAATGTAGTGGGGGGAGTGAAAGTGACTGAAACAGCAAGTGATTTGGCTTTGTTGGCTG
CAGTGATTTCAAGCTTACGTAATCGTATATTTGATAGTGAAACCATCATATTCGGTGAAGTGGGATTAGCTGGGGAAATC
AGACCAGTGCAAAGTGGTCAAGAACGCATTAAGGAGGCTATAAAACATGGATTCAAGCGTGCTATAGTCCCTTTTGCCAA
CGCTCCCAAACAGCAACTCGATTCCATGACGGTAGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)

AAA domain (AAA_25)

(74-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.037

96.009

0.461
  radA Streptococcus pneumoniae Rx1

48.349

94.013

0.455
  radA Streptococcus pneumoniae D39

48.349

94.013

0.455
  radA Streptococcus pneumoniae R6

48.349

94.013

0.455
  radA Streptococcus pneumoniae TIGR4

48.349

94.013

0.455
  radA Streptococcus mitis SK321

48.349

94.013

0.455
  radA Streptococcus mitis NCTC 12261

48.113

94.013

0.452