Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NAG75_RS02485 Genome accession   NZ_CP097873
Coordinates   350876..352618 (+) Length   580 a.a.
NCBI ID   WP_208893477.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GL-601     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345876..357618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS02465 pilM 348175..349191 (+) 1017 WP_005496568.1 type IV pilus biogenesis protein PilM Machinery gene
  NAG75_RS02470 pilN 349175..349753 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  NAG75_RS02475 pilO 349746..350339 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  NAG75_RS02480 pilP 350329..350844 (+) 516 WP_025532853.1 pilus assembly protein PilP Machinery gene
  NAG75_RS02485 pilQ 350876..352618 (+) 1743 WP_208893477.1 type IV pilus secretin PilQ Machinery gene
  NAG75_RS02490 aroK 352807..353325 (+) 519 WP_005381319.1 shikimate kinase AroK -
  NAG75_RS02495 aroB 353357..354457 (+) 1101 WP_017449465.1 3-dehydroquinate synthase -
  NAG75_RS02500 - 354510..356027 (+) 1518 WP_208893476.1 SPOR domain-containing protein -
  NAG75_RS02505 - 356097..356936 (+) 840 WP_005486862.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 63637.75 Da        Isoelectric Point: 4.4353

>NTDB_id=693189 NAG75_RS02485 WP_208893477.1 350876..352618(+) (pilQ) [Vibrio parahaemolyticus strain GL-601]
MKMRQGLTRTPRMLTGLFSLWLFLLLAPLAAAEDVQSNALKSIDFRTNKSKDAVIVVELASPAAIVDVKRVQEGLSIDLM
NTSVKDEQLYLLDVKDFATVVESVEVFRDTSTTRLVAYIDEEYTHDYRLTGRYLEITVSKLKPNEKVPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQKLTEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK
QVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGDGEGEEGGDGVGIDDFLNVNLAATNPNAAS
IAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKKAVLSLKVTPQIT
PDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRS
YENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=693189 NAG75_RS02485 WP_208893477.1 350876..352618(+) (pilQ) [Vibrio parahaemolyticus strain GL-601]
ATGAAAATGAGACAAGGATTAACACGTACACCAAGGATGCTTACTGGGCTCTTCTCCTTATGGTTGTTTTTACTTCTAGC
CCCTTTAGCAGCAGCAGAAGATGTACAGTCTAATGCGCTCAAGAGCATCGACTTTCGCACTAACAAAAGCAAAGATGCCG
TGATTGTGGTGGAGCTTGCATCCCCGGCGGCTATTGTTGATGTTAAACGTGTTCAAGAAGGATTAAGTATTGATTTAATG
AACACGTCGGTAAAAGACGAACAGCTTTACCTTCTCGACGTGAAAGATTTCGCGACGGTGGTGGAAAGTGTGGAAGTGTT
CCGCGATACCTCCACCACACGATTAGTTGCGTATATCGATGAAGAATACACGCATGACTATCGTTTGACGGGGCGTTATC
TTGAAATCACTGTCAGCAAGCTTAAACCAAATGAAAAAGTGCCAGACAAGAGCATCTTAGAAAAAGAAGGCAAGCTGATC
TCGATTAACTTCCAAGACATTCCTGTGCGTAACGTTTTGCAGCTGATTGCAGATTACAACCAGTTTAACTTGGTGGTTTC
GGATTCAGTCGAAGGCAACCTTACACTGCGTCTTGATGGTGTGCCGTGGCAACAAGTGCTCGACATCATCTTGCAAGTGA
AAGGGTTAGATAAGCGTGTTGATGGCAACGTGATTTTGGTCGCTCCAACCGATGAGTTGGATTTGCGCGAGAAGCAGCAG
TTAGAAAAACAAAAACTGACGGAAGAAATGGGTGAGCTTTCATCAGAAATCATCAAAGTCAATTTTGCTAAAGCTTCGGA
TATTGCAGAGATGATCAATGGTGAAGGCAACATTAGCATGTTGTCAGAGCGTGGCAGTATGACCATTGATGAGCGAACCA
ATTCGCTATTAATCAGAGAATTGCCAGAGAACATCGCCGTTATTCGCGAAATCATTGAATCGCTCGATATCCCAGTCAAA
CAAGTACAAATTGAAGCCCGAATTGTCACCATCAGTGAAGGTAACATGGACGAGTTAGGTATTCGTTGGGGCTTCACATC
TATTAATGGTAATAACACCGTTGGTGGCTCTATTGAGAACAACCTAGCGACAATCGGTTTGTACGAAGGTGATGGCGAAG
GTGAAGAGGGTGGTGATGGTGTTGGTATCGATGATTTTCTTAATGTGAATTTAGCCGCGACCAACCCGAATGCGGCGAGC
ATTGCGTTCCAAGTGGCAAAGTTAGGTTCTGATACATTATTGGACTTAGAGCTGTCTGCATTGCAGCAAGAATCAAAAGC
AGAAATCATTTCGAGCCCACGATTGATTACGACCAATAAGAAGCCCGCGTACATTGAACAAGGTACCGAAATTCCTTATC
TAGAATCTTCATCGAGTGGTGCAACGTCAGTGACCTTTAAAAAAGCGGTGTTGAGCTTGAAGGTGACACCGCAGATCACA
CCTGACAATCGTTTAGTGTTGGATCTGAGTGTGACCCAAGACCGACCTGGTAAGGTAGTGAAAACGGGCACAGGAGAGGC
AATGGCAATTGATACGCAGCGCATTGGTACCCAAGTTCTGGTTAATAATGGTGAGACGGTTGTGCTCGGTGGTATTTTTC
AGCACAGCATTACTAACTCAGTGGATAAAGTGCCATTGTTGGGCGATCTTCCGCTATTAGGCGCACTTTTCCGCCGAAGT
TACGAAAACGTTGGTAAAAGTGAGTTGCTAATTTTCGTTACGCCTAAGGTCGTTATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)

Bacterial type II and III secretion system protein (Secretin)

(420-578)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

92.586

100

0.926
  pilQ Vibrio cholerae strain A1552

76.678

97.586

0.748
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.678

97.586

0.748
  pilQ Pseudomonas aeruginosa PAK

39.826

99.138

0.395
  pilQ Legionella pneumophila strain ERS1305867

41.166

94.655

0.39
  pilQ Legionella pneumophila strain Lp02

41.166

94.655

0.39
  pilQ Acinetobacter baumannii D1279779

37.584

100

0.386
  pilQ Acinetobacter baumannii strain A118

37.584

100

0.386
  comQ Acinetobacter baylyi ADP1

38.038

100

0.381