Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M8C01_RS14545 Genome accession   NZ_CP097858
Coordinates   3179712..3180935 (+) Length   407 a.a.
NCBI ID   WP_264403760.1    Uniprot ID   -
Organism   Vibrio owensii strain GL-605     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3174712..3185935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS14525 ampD 3175783..3176334 (-) 552 WP_264403756.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M8C01_RS14530 nadC 3176427..3177314 (+) 888 WP_264403758.1 carboxylating nicotinate-nucleotide diphosphorylase -
  M8C01_RS14535 pilA 3177579..3177992 (+) 414 WP_039987783.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  M8C01_RS14540 pilB 3177993..3179678 (+) 1686 WP_264403759.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M8C01_RS14545 pilC 3179712..3180935 (+) 1224 WP_264403760.1 type II secretion system F family protein Machinery gene
  M8C01_RS14550 pilD 3181008..3181877 (+) 870 WP_041058619.1 A24 family peptidase Machinery gene
  M8C01_RS14555 coaE 3181878..3182492 (+) 615 WP_264403761.1 dephospho-CoA kinase -
  M8C01_RS14560 zapD 3182520..3183260 (+) 741 WP_009707572.1 cell division protein ZapD -
  M8C01_RS14565 yacG 3183323..3183517 (+) 195 WP_009707573.1 DNA gyrase inhibitor YacG -
  M8C01_RS14570 rplS 3183917..3184270 (-) 354 WP_005438036.1 50S ribosomal protein L19 -
  M8C01_RS14575 trmD 3184312..3185055 (-) 744 WP_005425529.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  M8C01_RS14580 rimM 3185083..3185631 (-) 549 WP_005438038.1 ribosome maturation factor RimM -
  M8C01_RS14585 rpsP 3185662..3185910 (-) 249 WP_005438039.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44940.24 Da        Isoelectric Point: 10.3176

>NTDB_id=693113 M8C01_RS14545 WP_264403760.1 3179712..3180935(+) (pilC) [Vibrio owensii strain GL-605]
MKTITPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKLSHRVKSKDITVFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFVGFGADLPAFTQMVLDLSAWTQNWGPFIGLGFLSLLIGS
KVISNRSDSFKLLLARSSLKIPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=693113 M8C01_RS14545 WP_264403760.1 3179712..3180935(+) (pilC) [Vibrio owensii strain GL-605]
ATGAAAACCATCACTCCTCAACTTAAGAACTACCGTTGGAAAGGCATCAATAGCTCGGGCAAAAAGACCTCAGGTAATGT
CCTCGCCATGACCGAAATTGAAGTGAGAGAACGCCTCGACGCGCAGCACATAAAAATTAAGAAACTGAAAAAAGGCAGTA
TTTCTTTTATCACTAAACTGAGCCACAGAGTCAAAAGTAAAGACATCACGGTGTTTACTCGCCAAATAGCTACCATGCTG
ATGACGGGCGTCCCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCATAAAAAAGCTGAAATGAAGTCGATTTTAAT
GAGTGTCACAAGGGCTGTTGAAGCCGGAACGCCAATGTCGAAAGCCATGCGCACCGCTAGCACGCATTTTGATCCGCTTT
ATACCGATTTAATCGCAACGGGTGAGCAGTCTGGTAACTTATCCCAAGTCTTCGAGCGTTTGGCTACCTACAGAGAAAAA
AGCGAACAGTTGCGCGCTAAAGTGATCAAAGCGCTTATTTATCCGGCCATGGTTGTCTTAGTTGCCTTAGGGGTTTCCTA
CCTAATGCTGACTCGAGTCATTCCTGAGTTTGAAAAGATGTTTGTCGGCTTTGGTGCAGATTTACCTGCTTTTACTCAGA
TGGTATTAGACCTCTCTGCTTGGACTCAAAACTGGGGCCCTTTCATTGGACTCGGTTTCTTGAGTCTCTTGATCGGCTCA
AAAGTCATATCGAACCGCTCTGATTCTTTCAAGCTATTGCTCGCTCGATCCAGTTTAAAGATCCCCATCTTGGGCCCTGT
TTTATCCAAAGCCGCCATTGCCAAGTTTAGCCGTACGCTTGCCACCAGTTTTAGTGCCGGTATTCCTATCCTAACCGCCT
TGAAAACTACCTCAAAAACCTCGGGTAACATGCACTATCAATTGGCAATAGAAGAGGTATACCGAGATACGGCTGCGGGT
ATGCCAATGTATATTGCGATGCGCAACTGCAATGTCTTCCCCGAGCTAGTATTGCAAATGGTCATGATTGGCGAAGAATC
TGGCCGCTTGGATGACATGCTCAACAAGATTGCAGCAATTTACGAGTTTGAAGTCGACAATACCGTCGATAACCTAAGTA
AGATTTTAGAGCCGCTGATCATCGTTTTTCTCGGGGTCGTTGTTGGCGGTTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTGATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

95.332

100

0.953
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.04

98.771

0.415
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilC Acinetobacter baumannii D1279779

40.75

98.28

0.4
  pilG Neisseria meningitidis 44/76-A

39.609

100

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396
  pilG Neisseria gonorrhoeae MS11

39.356

99.263

0.391