Detailed information NTG0069090

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: STO1_RS08760
• Genome accession: NZ_AP018338
• Coordinates: 1712465..1712899 (-)
• Length: 144 a.a.
• NCBI ID: WP_172843654.1
• Uniprot ID: A0A224A8Y4
• Organism: Streptococcus oralis subsp. tigurinus strain osk_001
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1707465..1717899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STO1_RS08725 (STO1_016610)	rnpA	1707988..1708359 (-)	372	WP_000748120.1	ribonuclease P protein component	-
STO1_RS08730 (STO1_016620)	-	1708509..1709699 (-)	1191	WP_000167800.1	acetate kinase	-
STO1_RS08735 (STO1_016630)	comYH	1709750..1710703 (-)	954	WP_084917154.1	class I SAM-dependent methyltransferase	Machinery gene
STO1_RS08740 (STO1_016640)	-	1710762..1711352 (-)	591	WP_096422845.1	class I SAM-dependent methyltransferase	-
STO1_RS08745 (STO1_016650)	comGG/cglG	1711385..1711798 (-)	414	WP_096422847.1	competence type IV pilus minor pilin ComGG	Machinery gene
STO1_RS08750 (STO1_016660)	comGF/cglF	1711776..1712237 (-)	462	WP_000250700.1	competence type IV pilus minor pilin ComGF	Machinery gene
STO1_RS08755 (STO1_016670)	comGE/cglE	1712200..1712502 (-)	303	WP_000413383.1	competence type IV pilus minor pilin ComGE	Machinery gene
STO1_RS08760 (STO1_016680)	comGD/cglD	1712465..1712899 (-)	435	WP_172843654.1	competence type IV pilus minor pilin ComGD	Machinery gene
STO1_RS08765 (STO1_016690)	comGC/cglC	1712862..1713185 (-)	324	WP_000735798.1	competence type IV pilus major pilin ComGC	Machinery gene
STO1_RS08770	comGB/cglB	1713187..1714203 (-)	1017	WP_162138308.1	competence type IV pilus assembly protein ComGB	Machinery gene
STO1_RS08775 (STO1_016710)	comGA/cglA/cilD	1714151..1715092 (-)	942	WP_061428665.1	competence type IV pilus ATPase ComGA	Machinery gene
STO1_RS08780 (STO1_016720)	-	1715161..1715526 (-)	366	WP_000286399.1	DUF1033 family protein	-
STO1_RS08785 (STO1_016730)	nagA	1715679..1716830 (-)	1152	WP_096422851.1	N-acetylglucosamine-6-phosphate deacetylase	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 15845.27 Da
• Isoelectric Point: 10.4335

>NTDB_id=69090 STO1_RS08760 WP_172843654.1 1712465..1712899(-) (comGD/cglD) [Streptococcus oralis subsp. tigurinus strain osk_001]
MQNKKQVKLLQIKAFTMLESLLVLGLVSILALGLSGSVQSSFAAVEEQIFFMEFEELYRETQKRSLASQQKTSLNLDGQT
ISNGSQNLTVPKGIQAPSGQSIIFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 435 bp

>NTDB_id=69090 STO1_RS08760 WP_172843654.1 1712465..1712899(-) (comGD/cglD) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGCAAAACAAAAAACAAGTCAAACTGTTGCAGATTAAGGCCTTTACTATGCTGGAAAGTCTCTTAGTTTTGGGACTTGT
GAGTATCCTTGCCCTGGGCTTGTCTGGTTCTGTTCAATCCAGTTTTGCAGCGGTAGAAGAGCAGATTTTCTTTATGGAGT
TTGAAGAACTCTATCGGGAAACGCAAAAACGCAGTCTAGCCAGTCAGCAAAAGACCAGTCTGAACTTAGATGGACAGACG
ATCAGCAATGGCAGTCAAAACTTGACCGTTCCTAAAGGAATTCAGGCACCCTCAGGACAAAGCATTATATTTGACCGAGC
TGGAGGCAATTCGTCCCTGGCTAAGGTTGAATTTCAAACCAGCAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATG
GAAAAATTAAACGCATTAAGGAAACAAAAAATTAG

Domains

No domain identified.

3D structure

• AlphaFold DB: A0A224A8Y4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus mitis NCTC 12261	93.056	100	0.931
comGD/cglD	Streptococcus pneumoniae Rx1	95.489	92.361	0.882
comGD/cglD	Streptococcus pneumoniae D39	95.489	92.361	0.882
comGD/cglD	Streptococcus pneumoniae R6	95.489	92.361	0.882
comGD/cglD	Streptococcus mitis SK321	94.737	92.361	0.875
comGD/cglD	Streptococcus pneumoniae TIGR4	94.737	92.361	0.875
comYD	Streptococcus gordonii str. Challis substr. CH1	57.364	89.583	0.514
comYD	Streptococcus mutans UA140	48.062	89.583	0.431
comYD	Streptococcus mutans UA159	48.062	89.583	0.431