Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STO1_RS08735 Genome accession   NZ_AP018338
Coordinates   1709750..1710703 (-) Length   317 a.a.
NCBI ID   WP_084917154.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704750..1715703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS08710 (STO1_016580) - 1705506..1706129 (-) 624 WP_096422844.1 ribonuclease P -
  STO1_RS08715 (STO1_016590) jag 1706185..1707171 (-) 987 WP_084855913.1 RNA-binding cell elongation regulator Jag/EloR -
  STO1_RS08720 (STO1_016600) - 1707186..1708013 (-) 828 WP_000728097.1 membrane protein insertase YidC -
  STO1_RS08725 (STO1_016610) rnpA 1707988..1708359 (-) 372 WP_000748120.1 ribonuclease P protein component -
  STO1_RS08730 (STO1_016620) - 1708509..1709699 (-) 1191 WP_000167800.1 acetate kinase -
  STO1_RS08735 (STO1_016630) comYH 1709750..1710703 (-) 954 WP_084917154.1 class I SAM-dependent methyltransferase Machinery gene
  STO1_RS08740 (STO1_016640) - 1710762..1711352 (-) 591 WP_096422845.1 class I SAM-dependent methyltransferase -
  STO1_RS08745 (STO1_016650) comGG/cglG 1711385..1711798 (-) 414 WP_096422847.1 competence type IV pilus minor pilin ComGG Machinery gene
  STO1_RS08750 (STO1_016660) comGF/cglF 1711776..1712237 (-) 462 WP_000250700.1 competence type IV pilus minor pilin ComGF Machinery gene
  STO1_RS08755 (STO1_016670) comGE/cglE 1712200..1712502 (-) 303 WP_000413383.1 competence type IV pilus minor pilin ComGE Machinery gene
  STO1_RS08760 (STO1_016680) comGD/cglD 1712465..1712899 (-) 435 WP_172843654.1 competence type IV pilus minor pilin ComGD Machinery gene
  STO1_RS08765 (STO1_016690) comGC/cglC 1712862..1713185 (-) 324 WP_000735798.1 competence type IV pilus major pilin ComGC Machinery gene
  STO1_RS08770 comGB/cglB 1713187..1714203 (-) 1017 WP_162138308.1 competence type IV pilus assembly protein ComGB Machinery gene
  STO1_RS08775 (STO1_016710) comGA/cglA/cilD 1714151..1715092 (-) 942 WP_061428665.1 competence type IV pilus ATPase ComGA Machinery gene
  STO1_RS08780 (STO1_016720) - 1715161..1715526 (-) 366 WP_000286399.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35511.47 Da        Isoelectric Point: 4.1638

>NTDB_id=69086 STO1_RS08735 WP_084917154.1 1709750..1710703(-) (comYH) [Streptococcus oralis subsp. tigurinus strain osk_001]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLIVEELLDQEEISILEIGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGFKYLKSNGYAIFLAPSDLLTSPQ
SDSLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=69086 STO1_RS08735 WP_084917154.1 1709750..1710703(-) (comYH) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGATGCCTTGGTAGAGCAAAATAGTATCTACCTGGACGGCGAGACCGAGCTAGAGCAGGTCAAAGAGAACAATC
AAGCCCTTAAACGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCGGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACGCCGGATGCCATTGCCCTCCTCTTGGTACTTATTGTGGAAGAGTTGCTGGA
TCAAGAGGAAATTAGCATCCTCGAAATAGGTTCTGGTATGGGGATTTTGGGGGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCCAGTATGGCAGATGTGATTGGTTTGCAG
GCTGGTTTTGTCCAAGGAGATGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG
CTATTACCCAGACGATGCCATCGCTTCTCGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAACAAGGCTTCAAGTACCTTAAGTCAAATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGCCCTCAA
AGTGACTCATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATAGAACCCTTTGTCTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTTTTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

57.556

98.107

0.565
  comYH Streptococcus mutans UA159

57.235

98.107

0.562

Multiple sequence alignment