Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HT078_RS11380 Genome accession   NZ_AP023071
Coordinates   2163472..2164440 (-) Length   322 a.a.
NCBI ID   WP_118781269.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM15748     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2158472..2169440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT078_RS11355 (TUM15748C_21860) - 2159014..2160321 (-) 1308 WP_134909337.1 YadA-like family protein -
  HT078_RS11360 (TUM15748C_21870) - 2160307..2160960 (+) 654 WP_172763128.1 IS1595 family transposase -
  HT078_RS11365 (TUM15748C_21880) - 2160995..2161753 (-) 759 WP_003705058.1 ABC transporter ATP-binding protein -
  HT078_RS11370 (TUM15748C_21890) - 2161837..2162463 (-) 627 WP_050159086.1 FmdE family protein -
  HT078_RS11375 (TUM15748C_21900) - 2162508..2163482 (-) 975 WP_003690387.1 iron chelate uptake ABC transporter family permease subunit -
  HT078_RS11380 (TUM15748C_21910) ceuB 2163472..2164440 (-) 969 WP_118781269.1 ABC transporter permease Machinery gene
  HT078_RS11385 - 2164459..2164650 (-) 192 WP_162098494.1 hypothetical protein -
  HT078_RS11390 (TUM15748C_21920) - 2164668..2165633 (-) 966 WP_033910574.1 siderophore ABC transporter substrate-binding protein -
  HT078_RS11400 fetA 2165938..2168078 (-) 2141 Protein_2213 TonB-dependent siderophore receptor FetA/FrpB -
  HT078_RS11405 (TUM15748C_21950) - 2168583..2168873 (+) 291 WP_002214868.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34366.67 Da        Isoelectric Point: 10.5988

>NTDB_id=69067 HT078_RS11380 WP_118781269.1 2163472..2164440(-) (ceuB) [Neisseria gonorrhoeae strain TUM15748]
MTAKPFSLNLANLLLPAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLMGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=69067 HT078_RS11380 WP_118781269.1 2163472..2164440(-) (ceuB) [Neisseria gonorrhoeae strain TUM15748]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAGCAAGTGATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGATGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.86

93.478

0.391

Multiple sequence alignment