Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   STO1_RS00015 Genome accession   NZ_AP018338
Coordinates   2548..3738 (-) Length   396 a.a.
NCBI ID   WP_007520971.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1..8738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS00005 (STO1_000010) dnaA 154..1515 (-) 1362 WP_007520973.1 chromosomal replication initiator protein DnaA -
  STO1_RS00010 (STO1_000020) spo0J 1732..2490 (-) 759 WP_045618162.1 ParB/RepB/Spo0J family partition protein Regulator
  STO1_RS00015 (STO1_000030) htrA 2548..3738 (-) 1191 WP_007520971.1 S1C family serine protease Regulator
  STO1_RS00020 (STO1_000040) rlmH 3924..4403 (+) 480 WP_007520969.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  STO1_RS00030 (STO1_000050) comC 4686..4808 (+) 123 WP_007520968.1 competence-stimulating peptide ComC Regulator
  STO1_RS00035 (STO1_000060) comD 4821..6140 (+) 1320 WP_007520967.1 competence system sensor histidine kinase ComD Regulator
  STO1_RS00040 (STO1_000070) comE 6137..6889 (+) 753 WP_000866082.1 competence system response regulator transcription factor ComE Regulator
  STO1_RS00055 (STO1_000080) - 7130..7672 (-) 543 WP_007520966.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 396 a.a.        Molecular weight: 42029.95 Da        Isoelectric Point: 6.5093

>NTDB_id=69023 STO1_RS00015 WP_007520971.1 2548..3738(-) (htrA) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKHLQKFYKKGVKVLVIILIGFLSGALGSFVTLQLYQKQGNQATNNNSGTVTQTSYKNENSTTQAVNKIKDAVVSVITYS
ANKQSSVFGTEESNSDTDNQQIASEGSGVIYRKNENDAYIVTNTHVINGASKVDIRLADGTKVPGEIIGSDTFSDIAVVK
ISSEKVTTVAEFGDSSQLNVGETAIAIGSPLGSEYANTVTQGIISSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSGGP
LVNIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDVQNIIKQLESDGKVTRPALGIQMVNLSNVGANDLRKLNIPSGLTS
GVVVRSVQSNMPANGHLQKYDVITKVDDKEITSSTDLQYALYNHAIGDTIKITYYRNGKEETTSIKLDKNSGDLER

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=69023 STO1_RS00015 WP_007520971.1 2548..3738(-) (htrA) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAACACTTACAAAAATTTTACAAAAAGGGAGTTAAAGTTCTTGTAATCATTCTAATAGGATTTTTAAGTGGTGCCTT
AGGAAGTTTCGTAACATTACAACTTTATCAAAAACAAGGAAATCAAGCTACAAATAATAATTCTGGCACTGTAACTCAAA
CATCATACAAGAATGAAAACTCAACTACTCAAGCAGTGAATAAAATTAAGGATGCTGTTGTATCAGTCATTACTTACTCT
GCTAATAAACAAAGTAGTGTATTTGGAACCGAAGAATCAAATTCTGATACGGATAATCAACAGATTGCAAGTGAAGGATC
AGGTGTCATCTATAGAAAGAACGAAAATGATGCTTATATTGTAACAAATACTCACGTTATTAACGGAGCTTCAAAAGTTG
ATATCCGCTTAGCTGATGGTACAAAAGTTCCTGGTGAAATTATCGGATCGGATACCTTCTCTGATATTGCTGTCGTAAAA
ATTTCTTCAGAAAAAGTTACAACAGTGGCAGAATTTGGTGATTCAAGCCAACTTAATGTTGGAGAAACAGCGATTGCTAT
TGGTAGTCCTTTAGGTTCAGAATATGCTAATACAGTTACACAGGGAATCATCTCAAGTCTTAATCGAAATGTTTCTCTAA
AATCTGAAGATGGTCAAGCTATTTCAACAAAAGCCATTCAAACAGATACGGCCATTAACCCTGGTAACTCTGGTGGTCCG
CTTGTAAATATTCAAGGACAAGTAATTGGTATTACATCAAGTAAGATTGCAAGTAATGGTGGAACATCTGTGGAAGGTCT
TGGTTTTGCAATTCCTTCAAACGATGTACAAAATATTATTAAACAGCTTGAAAGTGATGGTAAAGTGACTCGTCCTGCTC
TTGGAATCCAAATGGTCAATCTATCTAACGTTGGAGCTAATGATCTTAGAAAACTAAACATTCCAAGTGGCCTCACTTCA
GGGGTAGTTGTTCGATCTGTTCAAAGTAATATGCCTGCAAATGGACATCTTCAAAAATACGATGTCATTACTAAAGTTGA
CGACAAAGAGATTACTTCATCAACAGACTTACAATATGCTCTTTACAACCATGCTATTGGAGACACTATAAAAATAACCT
ACTACCGTAATGGTAAGGAGGAAACAACCTCTATAAAACTAGATAAGAATTCTGGTGATTTGGAACGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

83.544

99.747

0.833

  htrA Streptococcus pneumoniae Rx1

82.785

99.747

0.826

  htrA Streptococcus pneumoniae D39

82.785

99.747

0.826

  htrA Streptococcus pneumoniae R6

82.785

99.747

0.826

  htrA Streptococcus pneumoniae TIGR4

82.785

99.747

0.826

  htrA Streptococcus gordonii str. Challis substr. CH1

65.578

100

0.659

  htrA Streptococcus mutans UA159

53.435

99.242

0.53


Multiple sequence alignment