Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   STO1_RS00010 Genome accession   NZ_AP018338
Coordinates   1732..2490 (-) Length   252 a.a.
NCBI ID   WP_045618162.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..7490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS00005 (STO1_000010) dnaA 154..1515 (-) 1362 WP_007520973.1 chromosomal replication initiator protein DnaA -
  STO1_RS00010 (STO1_000020) spo0J 1732..2490 (-) 759 WP_045618162.1 ParB/RepB/Spo0J family partition protein Regulator
  STO1_RS00015 (STO1_000030) htrA 2548..3738 (-) 1191 WP_007520971.1 S1C family serine protease Regulator
  STO1_RS00020 (STO1_000040) rlmH 3924..4403 (+) 480 WP_007520969.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  STO1_RS00030 (STO1_000050) comC 4686..4808 (+) 123 WP_007520968.1 competence-stimulating peptide ComC Regulator
  STO1_RS00035 (STO1_000060) comD 4821..6140 (+) 1320 WP_007520967.1 competence system sensor histidine kinase ComD Regulator
  STO1_RS00040 (STO1_000070) comE 6137..6889 (+) 753 WP_000866082.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29028.49 Da        Isoelectric Point: 8.2676

>NTDB_id=69022 STO1_RS00010 WP_045618162.1 1732..2490(-) (spo0J) [Streptococcus oralis subsp. tigurinus strain osk_001]
MEKFEMISISEIQKNPYQPRKEFDVEKLKELAQSIKENGLIQPIIVRQSPVIGYEILAGERRYRASLLAGLTSIPAVVKH
LSDQEMMVQSIIENLQRENLNPVEEARAYESLVEKGFTHTEIADKMGKSRPYITNFIRLLSLPEYILAEVENGNISQAHA
RSLVGLDKEQQDYFFQLIKNEDISVRRLEALLTEKKKKKQKKSDSFIKDEEDKLKKLLGLSVEIKLSKKDTGKIVISFSS
QEEYDRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=69022 STO1_RS00010 WP_045618162.1 1732..2490(-) (spo0J) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGGAAAAATTTGAAATGATTTCTATCTCTGAAATACAAAAAAATCCTTACCAACCTCGGAAAGAATTTGATGTAGAAAA
ATTAAAAGAATTGGCTCAGTCAATCAAAGAAAATGGGCTCATCCAACCAATCATCGTTCGTCAATCTCCTGTAATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGATATCGAGCTTCTCTCTTGGCTGGTCTGACCTCTATTCCAGCCGTTGTGAAACAC
CTATCAGATCAGGAAATGATGGTTCAATCAATCATTGAAAATTTGCAGAGAGAAAACTTAAATCCTGTTGAAGAAGCACG
CGCCTATGAATCTCTAGTAGAAAAAGGATTTACTCACACTGAGATAGCCGATAAAATGGGGAAATCTCGACCTTATATCA
CTAATTTTATTCGTTTACTTTCCCTACCAGAATATATCTTAGCTGAAGTAGAAAATGGGAACATTTCTCAAGCACATGCA
CGTTCACTAGTTGGTTTGGACAAAGAGCAGCAAGACTATTTCTTCCAACTAATCAAAAATGAAGATATTTCTGTGAGAAG
GTTGGAAGCACTACTGACAGAAAAAAAAAAAAAGAAGCAGAAAAAAAGCGATTCTTTCATCAAAGATGAAGAAGATAAAT
TAAAAAAACTACTAGGTTTAAGTGTAGAAATTAAACTTTCTAAAAAAGATACTGGAAAGATTGTCATCTCTTTTTCAAGT
CAAGAAGAATACGATAGAATTATTAACAGCCTGAAATGA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(145-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.988

100

0.512

Multiple sequence alignment