Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   M5E03_RS08950 Genome accession   NZ_CP097374
Coordinates   1758774..1759154 (+) Length   126 a.a.
NCBI ID   WP_044335941.1    Uniprot ID   A0AAP7UKB4
Organism   Bacillus safensis strain AHB11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1753774..1764154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS08940 (M5E03_08940) - 1754269..1757412 (+) 3144 WP_252050461.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  M5E03_RS08945 (M5E03_08945) - 1757606..1758514 (+) 909 WP_024425124.1 trypsin-like serine peptidase -
  M5E03_RS08950 (M5E03_08950) nucA/comI 1758774..1759154 (+) 381 WP_044335941.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  M5E03_RS08955 (M5E03_08955) - 1759299..1760147 (+) 849 WP_041117519.1 STAS domain-containing protein -
  M5E03_RS08960 (M5E03_08960) - 1760180..1760722 (-) 543 WP_041109224.1 IseA DL-endopeptidase inhibitor family protein -
  M5E03_RS08965 (M5E03_08965) - 1761019..1761462 (+) 444 WP_252050462.1 hypothetical protein -
  M5E03_RS08970 (M5E03_08970) lexA 1761508..1762128 (-) 621 WP_034283422.1 transcriptional repressor LexA -
  M5E03_RS08975 (M5E03_08975) yneA 1762289..1762600 (+) 312 WP_034283425.1 cell division suppressor protein YneA -
  M5E03_RS08980 (M5E03_08980) - 1762618..1763265 (+) 648 WP_252050463.1 YneB family resolvase-like protein -
  M5E03_RS08985 (M5E03_08985) - 1763335..1763565 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13727.41 Da        Isoelectric Point: 8.5068

>NTDB_id=689261 M5E03_RS08950 WP_044335941.1 1758774..1759154(+) (nucA/comI) [Bacillus safensis strain AHB11]
MGTLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=689261 M5E03_RS08950 WP_044335941.1 1758774..1759154(+) (nucA/comI) [Bacillus safensis strain AHB11]
ATGGGCACGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCA
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTACAATATGTTAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGGCACCAAATCAGCGGGTTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548