Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M5E03_RS10350 Genome accession   NZ_CP097374
Coordinates   2038527..2039162 (+) Length   211 a.a.
NCBI ID   WP_034280474.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB11     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2033527..2044162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS10310 (M5E03_10310) - 2033677..2034795 (+) 1119 WP_024428115.1 NADH-dependent flavin oxidoreductase -
  M5E03_RS10315 (M5E03_10315) - 2034849..2035355 (-) 507 WP_024422767.1 PTS sugar transporter subunit IIA -
  M5E03_RS10320 (M5E03_10320) - 2035525..2035944 (+) 420 WP_252049517.1 Hsp20/alpha crystallin family protein -
  M5E03_RS10325 (M5E03_10325) - 2035965..2036426 (-) 462 WP_252049524.1 YppG family protein -
  M5E03_RS10330 (M5E03_10330) - 2036535..2036915 (-) 381 WP_224426683.1 YppE family protein -
  M5E03_RS10335 (M5E03_10335) - 2036965..2037198 (-) 234 WP_224426684.1 DUF5446 family protein -
  M5E03_RS10340 (M5E03_10340) sspM 2037396..2037500 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  M5E03_RS10345 (M5E03_10345) - 2037524..2038480 (-) 957 WP_101676918.1 DUF2515 domain-containing protein -
  M5E03_RS10350 (M5E03_10350) recU 2038527..2039162 (+) 636 WP_034280474.1 Holliday junction resolvase RecU Machinery gene
  M5E03_RS10355 (M5E03_10355) - 2039182..2041896 (+) 2715 WP_252049526.1 PBP1A family penicillin-binding protein -
  M5E03_RS10360 (M5E03_10360) - 2041933..2042442 (-) 510 WP_252049527.1 YpoC family protein -
  M5E03_RS10365 (M5E03_10365) nth 2042439..2043101 (-) 663 WP_024422776.1 endonuclease III -
  M5E03_RS10370 (M5E03_10370) - 2043119..2043823 (-) 705 WP_252049528.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.71 Da        Isoelectric Point: 9.8310

>NTDB_id=689262 M5E03_RS10350 WP_034280474.1 2038527..2039162(+) (recU) [Bacillus safensis strain AHB11]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=689262 M5E03_RS10350 WP_034280474.1 2038527..2039162(+) (recU) [Bacillus safensis strain AHB11]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATACAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACAAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTTTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAA
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701