Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M5C96_RS23025 Genome accession   NZ_CP097269
Coordinates   4920144..4921361 (+) Length   405 a.a.
NCBI ID   WP_272565514.1    Uniprot ID   -
Organism   Acidovorax sp. GBBC 1281     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4915144..4926361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C96_RS22995 (M5C96_22990) obgE 4915219..4916289 (-) 1071 WP_272565511.1 GTPase ObgE -
  M5C96_RS23000 (M5C96_22995) rpmA 4916413..4916670 (-) 258 WP_272548923.1 50S ribosomal protein L27 -
  M5C96_RS23005 (M5C96_23000) rplU 4916685..4916996 (-) 312 WP_272565512.1 50S ribosomal protein L21 -
  M5C96_RS23010 (M5C96_23005) - 4917253..4918182 (+) 930 WP_272569825.1 polyprenyl synthetase family protein -
  M5C96_RS23020 (M5C96_23015) pilB 4918393..4920123 (+) 1731 WP_272565513.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M5C96_RS23025 (M5C96_23020) pilC 4920144..4921361 (+) 1218 WP_272565514.1 type II secretion system F family protein Machinery gene
  M5C96_RS23030 (M5C96_23025) - 4921361..4922245 (+) 885 WP_272565516.1 A24 family peptidase -
  M5C96_RS23035 (M5C96_23030) coaE 4922250..4922870 (+) 621 WP_272565518.1 dephospho-CoA kinase -
  M5C96_RS23040 (M5C96_23035) zapD 4922935..4923690 (+) 756 WP_272565520.1 cell division protein ZapD -
  M5C96_RS23045 (M5C96_23040) - 4923704..4923952 (+) 249 WP_272565521.1 DNA gyrase inhibitor YacG -
  M5C96_RS23050 (M5C96_23045) - 4923993..4924448 (-) 456 WP_272565522.1 NUDIX domain-containing protein -
  M5C96_RS23055 (M5C96_23050) - 4924441..4925313 (-) 873 WP_272565524.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44541.51 Da        Isoelectric Point: 9.3918

>NTDB_id=688244 M5C96_RS23025 WP_272565514.1 4920144..4921361(+) (pilC) [Acidovorax sp. GBBC 1281]
MATAASRDIKDFVFEWEGKDRSGKIVRGEVRAVGENQVQATLRRQGVLPTKIKKRRMRSGKKIKPKDIALFTRQMATMMK
AGVPLLQSFDIVGRGNTNASVTKLLNDIRSDVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLAMYMEKT
EAIKSKIKSALMYPISVVIVAFVVVTVIMIFVIPAFKEVFTSFGAELPAPTLLVMAMSEVFVKWWWLIFGVLGGGFYFFM
QAWRRSEKVQMFMDRLLLRLPVFGSLIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYALATERIQQEVSTGT
SLTAAMGNANVFPSMVIQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=688244 M5C96_RS23025 WP_272565514.1 4920144..4921361(+) (pilC) [Acidovorax sp. GBBC 1281]
ATGGCAACCGCCGCATCGAGGGATATCAAGGACTTCGTCTTTGAATGGGAGGGTAAGGATCGCAGTGGAAAGATTGTCCG
CGGGGAAGTGCGCGCCGTAGGTGAAAACCAGGTCCAGGCGACCTTACGCAGACAGGGTGTGCTGCCTACCAAGATCAAGA
AGCGGCGCATGCGTTCGGGCAAGAAGATCAAGCCCAAGGACATCGCATTGTTCACGCGCCAGATGGCCACCATGATGAAG
GCTGGCGTGCCCCTGTTGCAATCCTTCGATATCGTGGGCCGGGGCAATACCAATGCCAGCGTCACGAAATTGCTCAACGA
CATTCGCAGCGACGTGGAAACCGGGACGTCGCTGAATGCAGCCTTCCGCAAGTACCCGATGTACTTCGACAGCCTTTATT
GCAACCTCGTCGAAGCCGGCGAGGCCGCGGGTATCTTGGAGGCGCTGCTGGACCGGCTTGCCATGTACATGGAAAAGACC
GAGGCCATCAAATCGAAGATCAAATCGGCATTGATGTACCCCATTTCGGTGGTGATCGTTGCATTCGTCGTGGTCACGGT
GATCATGATCTTTGTGATCCCCGCATTCAAGGAAGTATTTACCTCCTTCGGCGCTGAACTGCCGGCACCTACGCTCCTCG
TGATGGCCATGAGCGAGGTATTCGTCAAATGGTGGTGGCTGATTTTTGGCGTATTGGGCGGCGGATTTTATTTCTTCATG
CAGGCGTGGCGCCGCAGCGAAAAAGTACAGATGTTCATGGACCGCCTGTTGCTGCGGCTTCCGGTGTTCGGGTCCTTGAT
CGATAAATCATGCGTTGCTCGCTGGACCCGGACGTTGTCCACCATGTTCGCCGCAGGGGTTCCCCTGGTTGAAGCCTTGG
ATTCGGTGGGCGGCGCTTCCGGCAATTCCGTGTATGCCCTTGCTACGGAACGGATTCAGCAGGAAGTCTCGACAGGGACG
AGCTTGACGGCTGCCATGGGCAATGCCAACGTGTTCCCTTCCATGGTGATCCAGATGTGCGCCATTGGCGAAGAATCCGG
CTCCATCGACCACATGCTGGGCAAAGCCGCAGACTTCTACGAGGCCGAAGTGGATGAAATGGTCGCGGGGCTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTCCTGGGCACCATCATTGGGGGCATCGTGGTTTCGATGTATCTGCCGATCTTCAAA
CTGGGCCAAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.95

99.753

0.548
  pilG Neisseria gonorrhoeae MS11

52.273

97.778

0.511
  pilG Neisseria meningitidis 44/76-A

52.02

97.778

0.509
  pilC Acinetobacter baylyi ADP1

49.246

98.272

0.484
  pilC Legionella pneumophila strain ERS1305867

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

47.607

98.025

0.467
  pilC Vibrio cholerae strain A1552

39.798

98.025

0.39
  pilC Vibrio campbellii strain DS40M4

39.25

98.765

0.388
  pilC Thermus thermophilus HB27

37.717

99.506

0.375