Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M5C98_RS18570 Genome accession   NZ_CP097267
Coordinates   4069833..4071050 (+) Length   405 a.a.
NCBI ID   WP_272548924.1    Uniprot ID   -
Organism   Acidovorax sp. NCPPB 3576     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4064833..4076050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C98_RS18540 (M5C98_18540) obgE 4064910..4065980 (-) 1071 WP_272548922.1 GTPase ObgE -
  M5C98_RS18545 (M5C98_18545) rpmA 4066104..4066361 (-) 258 WP_272548923.1 50S ribosomal protein L27 -
  M5C98_RS18550 (M5C98_18550) rplU 4066376..4066687 (-) 312 WP_092741307.1 50S ribosomal protein L21 -
  M5C98_RS18555 (M5C98_18555) - 4066944..4067873 (+) 930 WP_272553336.1 polyprenyl synthetase family protein -
  M5C98_RS18565 (M5C98_18565) pilB 4068082..4069812 (+) 1731 WP_272553337.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M5C98_RS18570 (M5C98_18570) pilC 4069833..4071050 (+) 1218 WP_272548924.1 type II secretion system F family protein Machinery gene
  M5C98_RS18575 (M5C98_18575) - 4071050..4071934 (+) 885 WP_272548925.1 A24 family peptidase -
  M5C98_RS18580 (M5C98_18580) coaE 4071942..4072562 (+) 621 WP_272548926.1 dephospho-CoA kinase -
  M5C98_RS18585 (M5C98_18585) zapD 4072626..4073381 (+) 756 WP_272548927.1 cell division protein ZapD -
  M5C98_RS18590 (M5C98_18590) - 4073395..4073643 (+) 249 WP_272548928.1 DNA gyrase inhibitor YacG -
  M5C98_RS18595 (M5C98_18595) - 4073696..4074127 (-) 432 WP_272548929.1 NUDIX domain-containing protein -
  M5C98_RS18600 (M5C98_18600) - 4074132..4075004 (-) 873 WP_272553338.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44557.51 Da        Isoelectric Point: 9.3918

>NTDB_id=688221 M5C98_RS18570 WP_272548924.1 4069833..4071050(+) (pilC) [Acidovorax sp. NCPPB 3576]
MATAASRDIKDFVFEWEGKDRSGKIVRGEVRAVGENQVQATLRRQGVLPTKIKKRRMRSGKKIKPKDIALFTRQMATMMK
AGVPLLQSFDIVGRGNTNASVTKLLNDIRSDVETGTSLNGAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLAMYMEKT
EAIKSKIKSALMYPISVVIVAFVVVTVIMIFVIPAFKEVFTSFGAELPAPTLLVMGMSEIFVKWWWLIFGVLGGGFYFFM
QAWRRSEKVQMFMDRLLLRLPVFGSLIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYALATERIQQEVSTGT
SLTAAMGNANVFPSMVIQMCAIGEESGSIDHMLSKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=688221 M5C98_RS18570 WP_272548924.1 4069833..4071050(+) (pilC) [Acidovorax sp. NCPPB 3576]
ATGGCAACCGCCGCATCGAGAGATATCAAGGACTTTGTCTTTGAGTGGGAGGGCAAGGATCGTAGTGGAAAGATTGTCCG
CGGAGAAGTGCGAGCCGTCGGCGAAAACCAAGTCCAAGCGACATTGCGCAGACAAGGAGTCCTGCCCACCAAAATCAAGA
AGCGGCGCATGCGTTCGGGCAAGAAAATCAAGCCCAAGGACATCGCTCTGTTCACGCGCCAGATGGCAACCATGATGAAG
GCCGGCGTACCGTTGCTGCAATCCTTTGATATTGTGGGCCGAGGCAATACCAATGCCAGCGTCACAAAGTTGCTCAATGA
CATTCGAAGTGATGTGGAAACGGGAACATCGCTAAATGGTGCATTTCGCAAGTACCCAATGTATTTCGACAGTCTTTATT
GCAATCTTGTTGAAGCTGGCGAAGCTGCAGGTATTTTGGAGGCTTTGCTGGATAGGCTTGCCATGTACATGGAAAAGACC
GAGGCCATCAAATCGAAGATCAAATCAGCATTGATGTATCCCATTTCGGTGGTTATCGTTGCATTTGTTGTCGTAACGGT
GATCATGATTTTTGTGATTCCCGCATTCAAGGAAGTCTTCACTTCATTTGGAGCAGAATTGCCAGCGCCCACGCTCCTTG
TGATGGGCATGAGTGAGATATTTGTCAAATGGTGGTGGCTCATTTTTGGCGTATTAGGTGGGGGATTTTATTTTTTCATG
CAGGCTTGGCGCCGTAGCGAAAAAGTACAGATGTTCATGGATCGCCTATTGCTGCGGCTACCCGTTTTCGGGTCTTTGAT
TGATAAATCATGTGTAGCTCGCTGGACTCGTACGCTGTCCACCATGTTCGCCGCTGGCGTTCCCTTGGTTGAAGCCTTGG
ATTCGGTGGGTGGTGCATCTGGCAATTCCGTGTATGCCCTCGCTACTGAAAGAATTCAGCAGGAAGTGTCGACAGGGACG
AGCTTGACGGCAGCCATGGGCAATGCCAATGTCTTCCCCTCCATGGTGATTCAAATGTGCGCCATCGGGGAAGAATCAGG
CTCCATCGATCACATGTTGAGTAAGGCAGCGGATTTCTACGAAGCAGAAGTGGATGAAATGGTTGCAGGGCTCTCCAGCC
TAATGGAACCTATCATCATCGTTTTCCTGGGCACGATCATTGGGGGCATCGTGGTTTCGATGTACCTCCCGATTTTCAAA
CTGGGTCAAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.446

99.753

0.553
  pilG Neisseria gonorrhoeae MS11

52.273

97.778

0.511
  pilG Neisseria meningitidis 44/76-A

52.02

97.778

0.509
  pilC Acinetobacter baylyi ADP1

49.497

98.272

0.486
  pilC Legionella pneumophila strain ERS1305867

49.495

97.778

0.484
  pilC Acinetobacter baumannii D1279779

47.607

98.025

0.467
  pilC Vibrio cholerae strain A1552

39.798

98.025

0.39
  pilC Vibrio campbellii strain DS40M4

39.25

98.765

0.388
  pilC Thermus thermophilus HB27

37.717

99.506

0.375