Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CLROS_RS06445 Genome accession   NZ_CP096986
Coordinates   1476262..1476678 (+) Length   138 a.a.
NCBI ID   WP_077835368.1    Uniprot ID   A0A1S8KY60
Organism   Clostridium felsineum strain DSM 6424     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1471262..1481678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLROS_RS06425 (CLROS_012930) - 1472733..1473212 (+) 480 WP_077835372.1 hypothetical protein -
  CLROS_RS06430 (CLROS_012940) - 1473212..1475194 (+) 1983 WP_077835371.1 PcfJ domain-containing protein -
  CLROS_RS06435 (CLROS_012950) - 1475208..1475846 (+) 639 WP_077835370.1 metal-dependent hydrolase -
  CLROS_RS06440 (CLROS_012960) - 1476033..1476260 (+) 228 WP_077835369.1 hypothetical protein -
  CLROS_RS06445 (CLROS_012970) ssbA 1476262..1476678 (+) 417 WP_077835368.1 single-stranded DNA-binding protein Machinery gene
  CLROS_RS06450 (CLROS_012980) - 1476768..1477163 (+) 396 WP_077835367.1 hypothetical protein -
  CLROS_RS06455 (CLROS_012990) dnaN 1477260..1478399 (+) 1140 WP_077835366.1 DNA polymerase III subunit beta -
  CLROS_RS06460 (CLROS_013000) - 1478459..1479337 (+) 879 WP_077835365.1 hypothetical protein -
  CLROS_RS06465 (CLROS_013010) - 1479397..1479567 (+) 171 WP_176091655.1 hypothetical protein -
  CLROS_RS06470 (CLROS_013020) - 1479656..1479802 (+) 147 WP_176091654.1 hypothetical protein -
  CLROS_RS06475 (CLROS_013030) - 1480189..1481388 (+) 1200 WP_242950901.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15063.94 Da        Isoelectric Point: 6.3725

>NTDB_id=685919 CLROS_RS06445 WP_077835368.1 1476262..1476678(+) (ssbA) [Clostridium felsineum strain DSM 6424]
MNKVVLIGRLIKDPVLKFIQGSGTAVAQFNIAVDRRFKKEGQPEADFVPIVVWGKQAESTANYISKGRLIGISGRIQTRS
YDAKDGSKRYVTEIIAEEVQFLDYGSNGNTSSRGNQSGSIGLPDNNDITPIDDGDIPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=685919 CLROS_RS06445 WP_077835368.1 1476262..1476678(+) (ssbA) [Clostridium felsineum strain DSM 6424]
ATGAATAAGGTTGTATTAATAGGAAGGTTAATCAAAGATCCAGTGTTGAAATTTATACAAGGAAGCGGAACAGCAGTAGC
ACAATTCAATATAGCTGTTGACAGGAGATTCAAAAAAGAAGGACAACCAGAAGCCGATTTTGTACCTATAGTTGTATGGG
GAAAACAAGCTGAATCTACAGCTAATTATATAAGTAAAGGTAGACTAATAGGTATTAGCGGAAGAATACAAACTAGATCA
TATGATGCCAAAGATGGAAGTAAAAGATATGTTACAGAGATTATAGCTGAGGAAGTTCAATTTTTAGATTATGGTTCTAA
TGGAAATACAAGTAGTAGGGGAAATCAAAGTGGTTCAATTGGCTTACCAGACAACAACGATATAACTCCAATAGATGATG
GAGATATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S8KY60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

39.884

100

0.5
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.304

100

0.413
  ssbB/cilA Streptococcus mitis NCTC 12261

39.855

100

0.399
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.13

100

0.391
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.962

75.362

0.384
  ssbB/cilA Streptococcus mitis SK321

38.406

100

0.384
  ssbB/cilA Streptococcus pneumoniae Rx1

38.406

100

0.384
  ssbB/cilA Streptococcus pneumoniae D39

38.406

100

0.384
  ssbB/cilA Streptococcus pneumoniae R6

38.406

100

0.384
  ssbA Streptococcus mutans UA159

37.857

100

0.384