Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M1L61_RS17720 Genome accession   NZ_CP096975
Coordinates   3796421..3797680 (+) Length   419 a.a.
NCBI ID   WP_248853873.1    Uniprot ID   -
Organism   Stenotrophomonas sp. NY11291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3791421..3802680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1L61_RS17705 (M1L61_17705) pilR 3792089..3793462 (+) 1374 WP_228354731.1 sigma-54 dependent transcriptional regulator Regulator
  M1L61_RS17710 (M1L61_17710) pilB 3793581..3795308 (-) 1728 WP_248853872.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M1L61_RS17715 (M1L61_17715) - 3795617..3796060 (-) 444 WP_241881160.1 pilin -
  M1L61_RS17720 (M1L61_17720) pilC 3796421..3797680 (+) 1260 WP_248853873.1 type II secretion system F family protein Machinery gene
  M1L61_RS17725 (M1L61_17725) - 3797689..3798552 (+) 864 WP_010481503.1 A24 family peptidase -
  M1L61_RS17730 (M1L61_17730) coaE 3798564..3799175 (+) 612 WP_043402827.1 dephospho-CoA kinase -
  M1L61_RS17735 (M1L61_17735) - 3799336..3799722 (-) 387 WP_049481722.1 hypothetical protein -
  M1L61_RS17740 (M1L61_17740) - 3800207..3801574 (-) 1368 WP_032952284.1 HAMP domain-containing sensor histidine kinase -
  M1L61_RS17745 (M1L61_17745) - 3801537..3802214 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45906.39 Da        Isoelectric Point: 10.1591

>NTDB_id=685838 M1L61_RS17720 WP_248853873.1 3796421..3797680(+) (pilC) [Stenotrophomonas sp. NY11291]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGIKMKGEQLAKNANMLRAELRKQGINPGQVKPKPKPLFGTAGKPVSAKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDGVRADIEGGSSLHEAISRYPVQFDELYRNLVRAGESAGVLE
TVLDTIATYKENIEALKGKIKKALFYPAMVLVVAFLVSTVLLVWVVPQFEEVFKSFGADLPAFTQMVVNLSKFMVSWWWL
MAIVMIGSVVAIAMTYRRSEKMQHTVDRLVLKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYGE
AVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGLVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=685838 M1L61_RS17720 WP_248853873.1 3796421..3797680(+) (pilC) [Stenotrophomonas sp. NY11291]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCGCGTAGCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGTATCAAGATGAAGGGCGAGCAGTTGGCCAAGAACGCCAATATGCTGCGCGCCGAACTACGCAAGC
AGGGAATCAACCCCGGCCAGGTTAAGCCGAAGCCGAAGCCGCTGTTCGGCACAGCCGGCAAGCCGGTGAGTGCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCGACGATGATGAAGTCCGGCGTGCCGATAGTCTCGGCACTGGAGATCATCGGCAG
CGGGCACAAAAACCCACGCATGAAGAAGATGGTGGACGGAGTTCGCGCCGACATCGAAGGCGGCTCATCGCTGCACGAAG
CGATCAGCCGCTACCCTGTCCAGTTCGACGAGCTCTACCGCAACCTGGTACGGGCTGGTGAAAGTGCCGGCGTGCTGGAA
ACGGTGCTGGATACCATCGCCACCTATAAAGAGAACATCGAGGCGCTGAAGGGCAAGATCAAGAAGGCCCTGTTCTACCC
GGCCATGGTGCTGGTGGTGGCCTTCCTGGTCAGCACCGTCTTGCTGGTCTGGGTGGTGCCGCAGTTCGAGGAGGTCTTCA
AGAGCTTCGGTGCAGACCTACCGGCCTTCACCCAGATGGTGGTCAACCTGTCAAAGTTCATGGTGTCCTGGTGGTGGCTG
ATGGCCATCGTCATGATCGGATCGGTGGTGGCCATCGCCATGACCTACCGACGCTCGGAGAAGATGCAGCATACGGTCGA
CCGGCTGGTGCTGAAGGTGCCGGTGATCGGCCAGATCATGCATAACAGCGCCATTGCCCGATTTGCACGGACCACGGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCTGGCGCCACCGGCAACAAGGTCTATGGCGAG
GCGGTACTGCGGATGCGCGACGACGTCTCGGTGGGCTACCCGGTCAACATGGCCATGAAGCAGCTGAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCAGGCGCCCTGGACGCCATGCTGTTCAAGGTGGCTGAATACTACG
AGCAGGAAGTGAACAATGCCGTGGATGCCTTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTC
GGTGGCTTGGTCATCGCGATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.778

94.511

0.499
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baylyi ADP1

50.493

96.897

0.489
  pilC Acinetobacter baumannii D1279779

51.134

94.749

0.484
  pilG Neisseria gonorrhoeae MS11

42.821

94.749

0.406
  pilG Neisseria meningitidis 44/76-A

42.569

94.749

0.403
  pilC Vibrio campbellii strain DS40M4

41.147

95.704

0.394
  pilC Vibrio cholerae strain A1552

40.64

96.897

0.394