Detailed information NTG0685836

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: M1L61_RS17705
• Genome accession: NZ_CP096975
• Coordinates: 3792089..3793462 (+)
• Length: 457 a.a.
• NCBI ID: WP_228354731.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. NY11291
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3787089..3798462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M1L61_RS17690 (M1L61_17690)	sucD	3787944..3788819 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
M1L61_RS17695 (M1L61_17695)	sucC	3788840..3790009 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
M1L61_RS17700 (M1L61_17700)	-	3790415..3792028 (+)	1614	WP_217014085.1	ATP-binding protein	-
M1L61_RS17705 (M1L61_17705)	pilR	3792089..3793462 (+)	1374	WP_228354731.1	sigma-54 dependent transcriptional regulator	Regulator
M1L61_RS17710 (M1L61_17710)	pilB	3793581..3795308 (-)	1728	WP_248853872.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M1L61_RS17715 (M1L61_17715)	-	3795617..3796060 (-)	444	WP_241881160.1	pilin	-
M1L61_RS17720 (M1L61_17720)	pilC	3796421..3797680 (+)	1260	WP_248853873.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49667.94 Da
• Isoelectric Point: 6.5122

>NTDB_id=685836 M1L61_RS17705 WP_228354731.1 3792089..3793462(+) (pilR) [Stenotrophomonas sp. NY11291]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPAPGPATEQAARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALDHYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=685836 M1L61_RS17705 WP_228354731.1 3792089..3793462(+) (pilR) [Stenotrophomonas sp. NY11291]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAAGCACGCGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTTCCGGATGGCAACGGCATTGAGCTGGTCAGCGAAATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGTGGCCTGGTCAAGCACGCGCTGGAACTCAACAACACCGAACGCCCTGCGCCCGGCCCCGCCA
CCGAACAGGCTGCACGCCTGCTGGGCGCTTCGCCGGCCATGGACGTGTTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCCGGGGTTGGCAAGGAACTGGTCGCCCGCACCATCCACGCCCAGGGCGCGCG
TGCGGCCGGCCCGTTCGTTCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AAGGCAGCTTCAGCGGCGCCCATGCCGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCGCGGTCGGTGCGGC
CAACGAAGAGCCGGTGGACGTACGCATCCTCTCTGCCACCCACAAGGACCTGGCCGAGCTGGTCGAAGATGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAG
CTGGCGGCCGCCGTGCTGGCGCGGCTGGCCCGCAGCCACGGCCGTGCCACCCCGCTACTGGCGCCGTCGGCGCTGGAGGC
GCTGGACCACTATGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATTCTGGAACGCGCGCTGGCACTGGCCGAAGAAG
ACCGCATCGGTGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGCACGCCCGGCAGCGCAGCGCACGCGGAAGCCGTG
GTGGACCTGCAGCCCGGCAGTGCCGCCCTGCCCTCGTACATCGAGCAGCTGGAACGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGGACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.719	99.781	0.626
pilR	Acinetobacter baumannii strain A118	47.948	100	0.486