Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SNAG_RS09715 Genome accession   NZ_AP017652
Coordinates   1922506..1923696 (+) Length   396 a.a.
NCBI ID   WP_096408770.1    Uniprot ID   -
Organism   Streptococcus sp. NPS 308     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1917506..1928696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS09675 (SNAG_1894) - 1918563..1919105 (+) 543 WP_061407778.1 TetR-like C-terminal domain-containing protein -
  SNAG_RS09690 (SNAG_1897) comE 1919346..1920098 (-) 753 WP_000866077.1 competence system response regulator transcription factor ComE Regulator
  SNAG_RS09695 (SNAG_1898) comD 1920095..1921414 (-) 1320 WP_096408763.1 competence system sensor histidine kinase ComD Regulator
  SNAG_RS09700 (SNAG_1899) comC/comC2 1921435..1921560 (-) 126 WP_096408765.1 competence-stimulating peptide ComC Regulator
  SNAG_RS09710 (SNAG_1901) rlmH 1921841..1922320 (-) 480 WP_096408768.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SNAG_RS09715 (SNAG_1902) htrA 1922506..1923696 (+) 1191 WP_096408770.1 S1C family serine protease Regulator
  SNAG_RS09720 (SNAG_1903) spo0J 1923754..1924512 (+) 759 WP_004239627.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 396 a.a.        Molecular weight: 41869.72 Da        Isoelectric Point: 6.3586

>NTDB_id=68384 SNAG_RS09715 WP_096408770.1 1922506..1923696(+) (htrA) [Streptococcus sp. NPS 308]
MKHLQKFYKKVVKVLAIILIGFLSGALGSFVTLQLYQKQGNQATNNNSNTVTQTSYKNETSTTQAVNKVKDAVVSVITYS
SNRQSSVFNGDETNSDSDNQQIASEGSGVIYKKDDKDAYLVTNTHVINGASKVDIRLADGTKVPGEIVGSDTFSDIAVVK
ISSEKVTTVAEFGDSSQLSVGETAIAIGSPLGSEYANTVTQGIISSLNRTVSLKSEDGQAISTKAIQTDTAINPGNSGGP
LVNIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDAQNIIKQLESDGKVTRPALGIQMVNLANVGANDLRKLNIPSSLTS
GVVVRSVQSNMPANGHLQKYDVITKVDDKEIASSTDLQHALYTHAIGDTIKVTYYRNGKEETTSIKLDKNSGDLES

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=68384 SNAG_RS09715 WP_096408770.1 1922506..1923696(+) (htrA) [Streptococcus sp. NPS 308]
ATGAAACACTTACAAAAATTTTACAAAAAAGTAGTTAAAGTTCTTGCAATCATTCTAATAGGATTTTTAAGTGGTGCCTT
AGGAAGTTTCGTAACATTACAACTTTATCAAAAACAAGGAAATCAAGCTACAAATAATAATTCCAACACTGTTACCCAAA
CATCCTATAAGAATGAAACTTCAACTACCCAAGCAGTCAATAAAGTTAAAGATGCCGTTGTATCTGTTATTACTTATTCA
TCAAATAGACAAAGTAGTGTATTTAATGGTGATGAAACTAATTCTGATTCAGACAATCAACAAATCGCGAGTGAGGGATC
AGGTGTTATCTATAAAAAAGATGATAAAGATGCCTATCTTGTAACTAATACTCACGTTATCAATGGAGCTTCAAAAGTTG
ATATCCGCTTGGCAGATGGTACCAAGGTTCCTGGTGAGATTGTGGGATCTGATACTTTCTCTGATATTGCTGTCGTTAAA
ATTTCTTCAGAAAAAGTTACAACAGTAGCAGAATTTGGGGATTCAAGTCAACTTAGTGTTGGAGAAACAGCGATTGCTAT
CGGTAGTCCTCTAGGTTCAGAATATGCTAATACAGTTACACAGGGGATTATTTCAAGTCTTAATCGAACTGTATCTCTAA
AATCTGAAGATGGTCAAGCTATTTCTACAAAAGCTATTCAAACAGACACTGCTATTAACCCAGGTAATTCTGGTGGTCCA
CTTGTAAACATTCAAGGTCAAGTAATTGGTATTACATCAAGTAAAATTGCAAGTAATGGTGGAACATCTGTAGAAGGTCT
TGGTTTTGCAATTCCTTCAAACGATGCACAAAATATCATTAAACAGCTTGAAAGTGATGGTAAAGTGACTCGTCCAGCTC
TTGGAATTCAAATGGTCAATTTGGCTAATGTTGGAGCGAATGATCTGAGAAAACTCAACATCCCAAGTAGTCTTACTTCA
GGTGTAGTTGTTCGATCTGTTCAAAGTAATATGCCAGCAAATGGACATCTTCAAAAATACGACGTCATTACTAAAGTTGA
CGACAAAGAGATTGCCTCATCAACAGACCTACAACACGCTCTTTATACTCATGCTATCGGAGATACTATCAAAGTAACCT
ACTACCGTAATGGTAAAGAGGAAACAACCTCTATTAAGCTTGATAAGAATTCAGGTGATCTAGAGTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

83.081

100

0.831

  htrA Streptococcus pneumoniae Rx1

82.071

100

0.821

  htrA Streptococcus pneumoniae D39

82.071

100

0.821

  htrA Streptococcus pneumoniae R6

82.071

100

0.821

  htrA Streptococcus pneumoniae TIGR4

82.071

100

0.821

  htrA Streptococcus gordonii str. Challis substr. CH1

65.75

100

0.664

  htrA Streptococcus mutans UA159

54.637

100

0.551


Multiple sequence alignment