Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIM89_RS21325 Genome accession   NZ_CP110079
Coordinates   4788454..4789125 (+) Length   223 a.a.
NCBI ID   WP_023419465.1    Uniprot ID   A0ABY3GS82
Organism   Streptomyces sp. BI87     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4783454..4794125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIM89_RS21300 (OIM89_21300) - 4785237..4785431 (+) 195 WP_003948050.1 hypothetical protein -
  OIM89_RS21315 (OIM89_21315) tig 4786073..4787470 (+) 1398 WP_018468119.1 trigger factor -
  OIM89_RS21320 (OIM89_21320) clpP 4787769..4788386 (+) 618 WP_008411883.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIM89_RS21325 (OIM89_21325) clpP 4788454..4789125 (+) 672 WP_023419465.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIM89_RS21330 (OIM89_21330) clpX 4789284..4790570 (+) 1287 WP_023419466.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIM89_RS21335 (OIM89_21335) - 4790668..4791648 (-) 981 WP_030698005.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24311.59 Da        Isoelectric Point: 4.5381

>NTDB_id=682991 OIM89_RS21325 WP_023419465.1 4788454..4789125(+) (clpP) [Streptomyces sp. BI87]
MNNFPGSGALGADGEYAGPRAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESIDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGSPGKRMALPNARVLIHQPYSETGRGQVSDL
EIAANEILRMRSQLEEMLAKHSTTPLDKIRDDIERDKILTAEDALAYGLIDQIVSTRKLNAGV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=682991 OIM89_RS21325 WP_023419465.1 4788454..4789125(+) (clpP) [Streptomyces sp. BI87]
ATGAACAACTTCCCCGGCAGCGGCGCACTCGGCGCCGACGGCGAATACGCGGGCCCGCGTGCCGAATCCCGTTACATCGT
TCCGCGGTTCGTCGAGCGCACCTCGCAGGGCGTGCGGGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCGTCGGCCAACGACGTGATGGCGCAGCTGCTGTGCCTGGAGTCGATCGACCCCGAC
CGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTGACCGCGATCTACGACACGATGCAGTTCGT
GAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTGCTGCTGGCCGCCGGCTCGCCGGGCA
AGCGCATGGCGCTGCCCAACGCCCGCGTCCTGATCCACCAGCCGTACAGTGAGACGGGGCGCGGTCAGGTCTCCGACCTG
GAGATCGCGGCCAACGAAATCCTCCGGATGCGTTCGCAGTTGGAGGAGATGCTGGCCAAGCACTCGACGACGCCGCTGGA
CAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCCTACGGTCTGATCGACCAGATCG
TGTCGACCCGGAAGCTCAACGCCGGAGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

85.202

0.439
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.677

84.753

0.413
  clpP Streptococcus mutans UA159

44.221

89.238

0.395
  clpP Streptococcus pneumoniae Rx1

44.388

87.892

0.39
  clpP Streptococcus pneumoniae D39

44.388

87.892

0.39
  clpP Streptococcus pneumoniae R6

44.388

87.892

0.39
  clpP Streptococcus pneumoniae TIGR4

44.388

87.892

0.39
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

87.892

0.39
  clpP Streptococcus pyogenes JRS4

44.615

87.444

0.39
  clpP Streptococcus pyogenes MGAS315

44.615

87.444

0.39
  clpP Streptococcus thermophilus LMD-9

44.103

87.444

0.386
  clpP Streptococcus thermophilus LMG 18311

44.103

87.444

0.386
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

87.892

0.381