Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIM89_RS21320 Genome accession   NZ_CP110079
Coordinates   4787769..4788386 (+) Length   205 a.a.
NCBI ID   WP_008411883.1    Uniprot ID   A0ABR4S5V2
Organism   Streptomyces sp. BI87     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4782769..4793386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIM89_RS21295 (OIM89_21295) - 4783272..4784474 (-) 1203 WP_037665403.1 acyltransferase family protein -
  OIM89_RS21300 (OIM89_21300) - 4785237..4785431 (+) 195 WP_003948050.1 hypothetical protein -
  OIM89_RS21315 (OIM89_21315) tig 4786073..4787470 (+) 1398 WP_018468119.1 trigger factor -
  OIM89_RS21320 (OIM89_21320) clpP 4787769..4788386 (+) 618 WP_008411883.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIM89_RS21325 (OIM89_21325) clpP 4788454..4789125 (+) 672 WP_023419465.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIM89_RS21330 (OIM89_21330) clpX 4789284..4790570 (+) 1287 WP_023419466.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIM89_RS21335 (OIM89_21335) - 4790668..4791648 (-) 981 WP_030698005.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21568.44 Da        Isoelectric Point: 4.6747

>NTDB_id=682990 OIM89_RS21320 WP_008411883.1 4787769..4788386(+) (clpP) [Streptomyces sp. BI87]
MTNLMPSAAGDPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLASDPDKDINLYINSPGGSISAGMAIYD
TMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTG
QSVEQITRDSDRDRWFSADEAKEYGLIDEVIASAANVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=682990 OIM89_RS21320 WP_008411883.1 4787769..4788386(+) (clpP) [Streptomyces sp. BI87]
GTGACGAATCTGATGCCCTCCGCCGCCGGCGACCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCT
CGGTGAGCGGATCATCTTCCTCGGCCAGCCCGTGGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTGCTCCTTG
CCAGCGACCCTGACAAGGACATCAACCTCTACATCAACAGCCCCGGCGGTTCGATCAGCGCCGGCATGGCGATCTACGAC
ACCATGCAGTTCATCAAGAACGACGTGGTCACCATCGCCATGGGGCTGGCCGCCTCGATGGGTCAGTTCCTGCTGAGCGC
CGGCACCCCCGGCAAGCGCTTCGCCCTGCCGAACGCCGAAATCCTGATCCACCAGCCTTCCGCCGGTCTGGCCGGTTCCG
CCTCGGACATCAAGATCCACGCGGAGCGGCTGCTGCACACCAAGAAGCGGATGGCCGAGCTGACCGCGTTCCACACCGGT
CAGAGCGTCGAGCAGATCACCCGGGACTCGGACCGCGACCGCTGGTTCTCCGCCGACGAGGCCAAGGAGTACGGCCTGAT
CGACGAGGTCATCGCCTCCGCGGCCAACGTGCCCGGCGGCGGCGGCACCGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.789

92.683

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

53.608

94.634

0.507
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.093

94.634

0.502
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.172

84.878

0.468
  clpP Streptococcus mutans UA159

54.913

84.39

0.463
  clpP Streptococcus pneumoniae D39

53.714

85.366

0.459
  clpP Streptococcus pneumoniae Rx1

53.714

85.366

0.459
  clpP Streptococcus pneumoniae R6

53.714

85.366

0.459
  clpP Streptococcus pneumoniae TIGR4

53.714

85.366

0.459
  clpP Streptococcus thermophilus LMG 18311

53.143

85.366

0.454
  clpP Streptococcus thermophilus LMD-9

53.143

85.366

0.454
  clpP Streptococcus pyogenes JRS4

53.757

84.39

0.454
  clpP Streptococcus pyogenes MGAS315

53.757

84.39

0.454