Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M0C34_RS17075 Genome accession   NZ_CP096670
Coordinates   3759827..3761074 (+) Length   415 a.a.
NCBI ID   WP_305883136.1    Uniprot ID   -
Organism   Agarivorans sp. TSD2052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3754827..3766074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0C34_RS17055 (M0C34_17055) ampD 3755408..3755947 (-) 540 WP_248712874.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M0C34_RS17060 (M0C34_17060) nadC 3756411..3757250 (+) 840 WP_248712875.1 carboxylating nicotinate-nucleotide diphosphorylase -
  M0C34_RS17065 (M0C34_17065) - 3757505..3758023 (+) 519 WP_248712876.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  M0C34_RS17070 (M0C34_17070) pilB 3758039..3759742 (+) 1704 WP_371923088.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M0C34_RS17075 (M0C34_17075) pilC 3759827..3761074 (+) 1248 WP_305883136.1 type II secretion system F family protein Machinery gene
  M0C34_RS17080 (M0C34_17080) pilD 3761077..3761967 (+) 891 WP_248712877.1 A24 family peptidase Machinery gene
  M0C34_RS17085 (M0C34_17085) coaE 3762080..3762682 (+) 603 WP_248712878.1 dephospho-CoA kinase -
  M0C34_RS17090 (M0C34_17090) zapD 3762743..3763483 (+) 741 WP_248712879.1 cell division protein ZapD -
  M0C34_RS17095 (M0C34_17095) yacG 3763483..3763680 (+) 198 WP_248712880.1 DNA gyrase inhibitor YacG -
  M0C34_RS17100 (M0C34_17100) mutT 3763809..3764207 (-) 399 WP_248712881.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45122.01 Da        Isoelectric Point: 9.6991

>NTDB_id=682228 M0C34_RS17075 WP_305883136.1 3759827..3761074(+) (pilC) [Agarivorans sp. TSD2052]
MATATPTKRKIAVKKISAFNWSGINRKGGKVGGEYQAESISQVKAELRRQGITVTKVKKKSEGFLSQLGNKINAMDIAIV
SRQIATMLSAGVPLVQSFGIISKSVEKPAMRELISEIAAEVESGTALSETLRKHPRYFDGLYCDLIEAGEQSGALETIYD
RVAIYKEKAEALKSKIKKAMFYPVTVIIVAIIVTTILLLFVIPQFEEIFASFNAELPAFTQFVIGISRFLQDYWPLIFGA
IAAIIVGYVQAHRRSQAVKDATDRFVLKIPVINPILHKAAMARFARTLSTTFAAGIPLIDALRSASGASGNVVYRNAIDA
VRIEVTGGMQMNIAMRTVNVFPDMVTQMVMIGEESGSLDSMLDKVANIYEQQVDDAVDGLTSMIEPLIMAVLGVLVGGMV
VAMYLPIFKLGSVVG

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=682228 M0C34_RS17075 WP_305883136.1 3759827..3761074(+) (pilC) [Agarivorans sp. TSD2052]
ATGGCTACTGCAACCCCCACTAAACGAAAAATCGCCGTAAAAAAAATTAGCGCCTTCAACTGGAGTGGCATCAACCGTAA
AGGCGGCAAGGTGGGGGGGGAATACCAAGCAGAAAGCATCAGCCAAGTAAAAGCCGAACTGCGCCGTCAAGGCATTACTG
TTACTAAAGTAAAAAAGAAAAGTGAAGGCTTTCTTAGCCAATTGGGTAACAAGATTAATGCTATGGATATTGCAATTGTC
TCACGGCAAATTGCTACCATGTTATCGGCCGGGGTACCGCTGGTACAAAGCTTTGGCATCATCTCAAAAAGTGTCGAAAA
GCCAGCGATGCGTGAGCTAATCAGTGAAATTGCCGCCGAGGTCGAGTCGGGTACAGCCTTATCAGAGACCCTACGTAAGC
ACCCGCGTTATTTTGATGGTTTATATTGTGATTTAATTGAAGCCGGTGAGCAAAGTGGCGCCTTAGAGACTATTTACGAC
CGGGTGGCCATTTATAAAGAAAAAGCCGAAGCACTTAAATCTAAAATTAAAAAAGCGATGTTTTACCCAGTGACAGTAAT
TATCGTGGCGATTATTGTGACAACGATTTTGTTGCTATTTGTGATCCCCCAATTTGAAGAGATTTTTGCCAGCTTTAACG
CTGAGCTACCGGCCTTTACCCAATTTGTGATAGGCATATCACGCTTCTTACAAGACTATTGGCCGCTGATTTTTGGCGCC
ATAGCCGCAATAATAGTCGGATATGTACAAGCCCATAGACGCTCACAAGCGGTGAAAGATGCCACCGACCGCTTTGTACT
AAAAATCCCAGTGATTAATCCGATTTTACATAAAGCCGCCATGGCCCGTTTTGCCCGCACCCTGTCTACCACTTTTGCCG
CCGGTATCCCGTTGATTGATGCACTGCGTTCAGCCTCTGGCGCCTCGGGCAATGTAGTTTATCGCAACGCCATTGATGCA
GTGCGCATTGAAGTGACTGGTGGTATGCAAATGAATATTGCGATGCGTACCGTGAATGTCTTCCCCGATATGGTCACCCA
GATGGTGATGATTGGTGAAGAGTCAGGGTCTTTAGATAGCATGTTAGACAAGGTAGCTAACATTTATGAACAGCAAGTAG
ATGATGCGGTAGATGGCTTAACCAGCATGATTGAGCCGCTGATTATGGCGGTGCTAGGGGTATTGGTAGGTGGTATGGTA
GTGGCAATGTATTTACCTATCTTTAAACTTGGATCAGTTGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(284-406)

Type II secretion system (T2SS), protein F (T2SSF)

(81-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

54.902

98.313

0.54
  pilC Pseudomonas stutzeri DSM 10701

56

96.386

0.54
  pilC Acinetobacter baylyi ADP1

55.164

95.663

0.528
  pilC Legionella pneumophila strain ERS1305867

52.273

95.422

0.499
  pilC Vibrio cholerae strain A1552

46.5

96.386

0.448
  pilC Vibrio campbellii strain DS40M4

44.089

97.831

0.431
  pilG Neisseria gonorrhoeae MS11

41.728

97.59

0.407
  pilG Neisseria meningitidis 44/76-A

41.728

97.59

0.407