Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   M0C34_RS17080 Genome accession   NZ_CP096670
Coordinates   3761077..3761967 (+) Length   296 a.a.
NCBI ID   WP_248712877.1    Uniprot ID   -
Organism   Agarivorans sp. TSD2052     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3756077..3766967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0C34_RS17060 (M0C34_17060) nadC 3756411..3757250 (+) 840 WP_248712875.1 carboxylating nicotinate-nucleotide diphosphorylase -
  M0C34_RS17065 (M0C34_17065) - 3757505..3758023 (+) 519 WP_248712876.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  M0C34_RS17070 (M0C34_17070) pilB 3758039..3759742 (+) 1704 WP_371923088.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M0C34_RS17075 (M0C34_17075) pilC 3759827..3761074 (+) 1248 WP_305883136.1 type II secretion system F family protein Machinery gene
  M0C34_RS17080 (M0C34_17080) pilD 3761077..3761967 (+) 891 WP_248712877.1 A24 family peptidase Machinery gene
  M0C34_RS17085 (M0C34_17085) coaE 3762080..3762682 (+) 603 WP_248712878.1 dephospho-CoA kinase -
  M0C34_RS17090 (M0C34_17090) zapD 3762743..3763483 (+) 741 WP_248712879.1 cell division protein ZapD -
  M0C34_RS17095 (M0C34_17095) yacG 3763483..3763680 (+) 198 WP_248712880.1 DNA gyrase inhibitor YacG -
  M0C34_RS17100 (M0C34_17100) mutT 3763809..3764207 (-) 399 WP_248712881.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 32927.07 Da        Isoelectric Point: 6.5970

>NTDB_id=682229 M0C34_RS17080 WP_248712877.1 3761077..3761967(+) (pilD) [Agarivorans sp. TSD2052]
MDTFIELYPATALGFCLLFALCIGSFLNVVIHRLPIMLQRQWKAECHSFLADDAQPAEPSDRQTNATYNLMVPRSCCPNC
KSMITAWQNIPVVSWLLLRGKCANCKTPISARYPLVELASAGFALACWWQFDFSIQFVLASIFCIILLCLALIDLDTMFL
PDQITLPTLWLGLLINLDANFVNLQDAVLGAAIGYGFLWSLFWLFKLLTGKEGMGYGDFKLLAMIGAWFGWQALPLTILL
SSLIGASVGIGLMVLAKHKQSQAIPFGPYLAIGAVCYLFFGDAIQHWYFSYIGLVH

Nucleotide


Download         Length: 891 bp        

>NTDB_id=682229 M0C34_RS17080 WP_248712877.1 3761077..3761967(+) (pilD) [Agarivorans sp. TSD2052]
ATGGATACTTTTATTGAACTCTACCCAGCCACCGCGCTGGGTTTCTGCTTATTATTCGCCCTGTGTATTGGCTCATTCCT
TAATGTGGTGATTCATCGCCTGCCGATTATGCTGCAACGCCAGTGGAAGGCTGAGTGCCACAGCTTTTTGGCTGATGATG
CTCAGCCAGCGGAACCCTCAGACCGGCAAACCAACGCAACTTATAACCTAATGGTGCCACGCTCTTGCTGCCCTAATTGT
AAAAGCATGATCACCGCTTGGCAAAATATCCCAGTAGTAAGCTGGCTGTTATTGCGCGGCAAGTGTGCCAATTGTAAAAC
CCCCATTAGCGCCCGCTACCCGCTGGTAGAGCTTGCTAGCGCTGGCTTTGCCTTGGCGTGTTGGTGGCAATTTGACTTTA
GCATTCAGTTTGTACTGGCCAGTATCTTTTGCATTATTTTACTGTGCTTGGCCTTGATAGATTTAGATACCATGTTTTTG
CCTGATCAAATCACCCTACCCACCCTGTGGTTAGGTTTACTGATTAATCTGGATGCAAACTTTGTTAACCTGCAAGATGC
AGTACTCGGCGCTGCCATTGGTTATGGTTTTTTATGGAGCTTGTTTTGGCTATTTAAGCTACTCACCGGTAAAGAAGGCA
TGGGTTACGGCGACTTTAAGCTATTGGCGATGATCGGCGCGTGGTTTGGCTGGCAAGCCCTGCCTTTAACCATATTGCTG
TCTTCACTGATTGGTGCCAGCGTTGGCATAGGCTTAATGGTGTTGGCTAAACACAAGCAAAGCCAAGCGATCCCCTTCGG
CCCTTATTTAGCCATTGGCGCAGTGTGTTACCTATTCTTTGGCGACGCCATACAACACTGGTATTTTAGCTATATTGGCT
TGGTACACTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-131)

Type IV leader peptidase family (Peptidase_A24)

(142-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

49.32

99.324

0.49
  pilD Vibrio cholerae strain A1552

50.545

92.905

0.47
  pilD Neisseria gonorrhoeae MS11

45.583

95.608

0.436
  pilD Acinetobacter baumannii D1279779

46.154

92.23

0.426
  pilD Acinetobacter nosocomialis M2

45.788

92.23

0.422