Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MZ182_RS18155 Genome accession   NZ_CP096169
Coordinates   4084169..4085434 (+) Length   421 a.a.
NCBI ID   WP_011787902.1    Uniprot ID   A0A6N3J110
Organism   Shewanella sp. JNE2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4079169..4090434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZ182_RS18140 (MZ182_18140) nadC 4079651..4080538 (+) 888 WP_011787905.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MZ182_RS18145 (MZ182_18145) - 4081466..4081942 (+) 477 WP_248067534.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MZ182_RS18150 (MZ182_18150) pilB 4082026..4083735 (+) 1710 WP_248067532.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MZ182_RS18155 (MZ182_18155) pilC 4084169..4085434 (+) 1266 WP_011787902.1 type II secretion system F family protein Machinery gene
  MZ182_RS18160 (MZ182_18160) pilD 4085614..4086552 (+) 939 WP_248067529.1 prepilin peptidase Machinery gene
  MZ182_RS18165 (MZ182_18165) coaE 4086896..4087513 (+) 618 WP_248067527.1 dephospho-CoA kinase -
  MZ182_RS18170 (MZ182_18170) zapD 4087506..4088240 (+) 735 WP_011787899.1 cell division protein ZapD -
  MZ182_RS18175 (MZ182_18175) yacG 4088398..4088607 (+) 210 WP_011920039.1 DNA gyrase inhibitor YacG -
  MZ182_RS18180 (MZ182_18180) mutT 4088659..4089063 (+) 405 WP_011787897.1 8-oxo-dGTP diphosphatase MutT -
  MZ182_RS18185 (MZ182_18185) - 4089509..4090045 (+) 537 WP_248067524.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46325.74 Da        Isoelectric Point: 10.2387

>NTDB_id=680200 MZ182_RS18155 WP_011787902.1 4084169..4085434(+) (pilC) [Shewanella sp. JNE2]
MATATTVKKPRPKKIEPKSQPKIFTFEWKGTNRDGKKTGGELKGATVAEVKSQLKSQGVNPKVVRKKASPFFARNPDIKP
MDIAMATRQIATMLAAGVPLVTTIEILGRGHEKLKMRDLLGTILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEDIFKGFGAELPAFTQMIIGISRWLQSSW
YLFFIAITVGIWLFVRAHRNSQMVRDRVDEFVLKIPVIGEILHKAAMARFSRTLATTFAAGVPLIDGMESAAGASGNAVY
RKALLKVRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=680200 MZ182_RS18155 WP_011787902.1 4084169..4085434(+) (pilC) [Shewanella sp. JNE2]
ATGGCTACGGCAACGACAGTAAAAAAGCCTCGCCCAAAGAAGATTGAGCCCAAAAGCCAACCAAAGATTTTTACCTTTGA
ATGGAAAGGCACTAACCGCGATGGCAAAAAAACGGGTGGTGAGTTAAAGGGTGCAACAGTTGCAGAGGTAAAAAGCCAGC
TCAAATCCCAAGGAGTAAATCCTAAAGTCGTACGAAAAAAAGCATCTCCTTTCTTTGCCCGTAATCCTGATATCAAGCCC
ATGGATATCGCGATGGCAACTCGCCAGATAGCGACTATGCTGGCCGCCGGCGTTCCGCTTGTGACCACAATAGAAATATT
GGGACGTGGCCATGAAAAACTCAAAATGCGCGATCTGTTAGGGACAATTCTGTCAGAGATTCAATCGGGTATTCCGCTAT
CAGACGCCCTGCGCCCCCATAGGCGTTATTTTGATGATCTCTATGTAGACTTAGTGGCAGCAGGTGAGCATTCTGGTTCG
CTCGATGCGGTATTTGATCGCATTGCAACCTACAGGGAAAAAGCGGAGCAGCTAAAATCTAAAATCAAAAAAGCCATGTT
TTATCCCGCCGCCGTTGTGGTCGTCGCTATTTTAGTGACCACATTGTTATTACTCTTTGTCGTACCTCAGTTCGAAGATA
TTTTTAAAGGATTTGGCGCTGAACTCCCCGCCTTTACACAGATGATCATTGGTATCTCGCGCTGGTTGCAAAGCTCTTGG
TATCTCTTTTTCATTGCGATTACGGTGGGGATTTGGTTATTTGTCCGTGCCCATCGCAATTCACAAATGGTTCGTGACCG
TGTTGATGAATTTGTACTTAAGATCCCTGTTATCGGCGAAATTCTGCATAAGGCAGCCATGGCGCGCTTTTCTCGTACCT
TAGCCACCACCTTTGCGGCAGGTGTGCCGTTGATTGATGGGATGGAATCCGCGGCGGGAGCATCGGGTAATGCCGTATAT
CGCAAAGCACTGTTAAAAGTACGCCAAGAGGTCATGGCTGGTATGCAAATGAACGTCGCGATGCGTACTACGGGTTTGTT
CCCCGATATGCTGATCCAAATGGTGATGATTGGTGAAGAGTCTGGATCGCTAGATAATATGCTAAATAAGGTGGCTAATA
TTTATGAAATGCAAGTCGATGACGCTGTGGATGGTTTATCGAGTCTAATTGAACCCATTATGATGGTGGTGATTGGCACC
CTTGTGGGTGGTTTAATTGTGGGAATGTATCTCCCTATCTTCCAAATGGGAAATGTCGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N3J110

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.684

93.824

0.513
  pilC Acinetobacter baylyi ADP1

50.882

94.299

0.48
  pilC Legionella pneumophila strain ERS1305867

49.752

95.962

0.477
  pilC Acinetobacter baumannii D1279779

50.251

94.537

0.475
  pilC Vibrio cholerae strain A1552

46.867

94.774

0.444
  pilC Vibrio campbellii strain DS40M4

44.499

97.15

0.432
  pilG Neisseria gonorrhoeae MS11

41.294

95.487

0.394
  pilG Neisseria meningitidis 44/76-A

41.191

95.724

0.394