Detailed information NTG0680201

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MZ182_RS18160
• Genome accession: NZ_CP096169
• Coordinates: 4085614..4086552 (+)
• Length: 312 a.a.
• NCBI ID: WP_248067529.1
• Uniprot ID: -
• Organism: Shewanella sp. JNE2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4080614..4091552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MZ182_RS18145 (MZ182_18145)	-	4081466..4081942 (+)	477	WP_248067534.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
MZ182_RS18150 (MZ182_18150)	pilB	4082026..4083735 (+)	1710	WP_248067532.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MZ182_RS18155 (MZ182_18155)	pilC	4084169..4085434 (+)	1266	WP_011787902.1	type II secretion system F family protein	Machinery gene
MZ182_RS18160 (MZ182_18160)	pilD	4085614..4086552 (+)	939	WP_248067529.1	prepilin peptidase	Machinery gene
MZ182_RS18165 (MZ182_18165)	coaE	4086896..4087513 (+)	618	WP_248067527.1	dephospho-CoA kinase	-
MZ182_RS18170 (MZ182_18170)	zapD	4087506..4088240 (+)	735	WP_011787899.1	cell division protein ZapD	-
MZ182_RS18175 (MZ182_18175)	yacG	4088398..4088607 (+)	210	WP_011920039.1	DNA gyrase inhibitor YacG	-
MZ182_RS18180 (MZ182_18180)	mutT	4088659..4089063 (+)	405	WP_011787897.1	8-oxo-dGTP diphosphatase MutT	-
MZ182_RS18185 (MZ182_18185)	-	4089509..4090045 (+)	537	WP_248067524.1	thioredoxin family protein	-
MZ182_RS18190 (MZ182_18190)	-	4090309..4091235 (-)	927	WP_248067521.1	exopolyphosphatase	-

Sequence

Protein

• Length: 312 a.a.
• Molecular weight: 34833.14 Da
• Isoelectric Point: 6.4844

>NTDB_id=680201 MZ182_RS18160 WP_248067529.1 4085614..4086552(+) (pilD) [Shewanella sp. JNE2]
MTEFITLLGQSFDHAFEQSPWLFVTLSFIFAATIGSFLNVVIHRLPIMMKREWQQECNQYLQEYHADIVNQVGIDRLNKP
IDSYPEKYNIVAPGSACPQCKTAIKPWHNMPVLGWLILRGKCATCHAPISTRYPIIELITGLLIAALAWHFGPSWQFVFA
SLLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAIIGAAAGYLSLWSIFWVFKLLTGKEGMGYGDFK
LLAVFGAWLGWQMLPLVILLSSLVGAVVGIGMIISKRNQMDNPIPFGPYIAAAGWIALVWGNTIVDWYLGTL

Nucleotide

• Length: 939 bp

>NTDB_id=680201 MZ182_RS18160 WP_248067529.1 4085614..4086552(+) (pilD) [Shewanella sp. JNE2]
ATGACTGAATTTATCACTTTATTAGGCCAATCTTTCGACCACGCTTTTGAACAGAGCCCTTGGCTCTTCGTCACCTTAAG
CTTTATTTTTGCCGCGACTATTGGCAGTTTTCTAAATGTGGTCATCCACCGACTCCCGATCATGATGAAGCGTGAATGGC
AGCAGGAATGTAATCAATATTTACAGGAATACCATGCAGATATCGTTAACCAAGTCGGTATCGATAGGCTTAATAAACCC
ATAGATAGCTATCCCGAAAAGTACAATATTGTGGCGCCAGGCTCAGCTTGCCCTCAGTGTAAAACCGCCATCAAACCTTG
GCATAATATGCCTGTGCTCGGTTGGTTAATCCTTAGGGGGAAATGTGCCACCTGTCATGCACCTATCTCGACCCGTTATC
CGATTATTGAATTAATCACAGGTTTACTGATCGCAGCTTTAGCTTGGCATTTTGGCCCCAGTTGGCAATTTGTTTTTGCC
TCTTTACTCACCTTTGTATTGATTGCGCTGACGGGTATAGATCTGGATGAAATGTTGTTACCGGATCAGTTAACACTGCC
CCTACTGTGGCTTGGGCTATTACTCAATTTACACCATACCTTTGCTAGCCCAACGGATGCCATTATCGGTGCAGCCGCAG
GCTATTTAAGCCTATGGTCAATTTTCTGGGTGTTTAAGTTACTCACAGGCAAAGAAGGTATGGGCTATGGCGACTTTAAA
CTGTTGGCCGTTTTTGGGGCTTGGCTTGGCTGGCAAATGTTGCCACTGGTGATTTTACTCTCCTCATTAGTGGGTGCTGT
TGTGGGCATTGGCATGATTATCAGCAAGCGTAATCAGATGGATAACCCTATTCCCTTTGGCCCTTATATTGCCGCCGCAG
GCTGGATTGCACTGGTTTGGGGAAACACTATCGTCGACTGGTATTTAGGGACACTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (163-270)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (29-151)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.177	95.833	0.51
pilD	Vibrio campbellii strain DS40M4	51	96.154	0.49
pilD	Acinetobacter baumannii D1279779	48.789	92.628	0.452
pilD	Acinetobacter nosocomialis M2	48.789	92.628	0.452
pilD	Neisseria gonorrhoeae MS11	43.793	92.949	0.407