Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MZ018_RS03005 Genome accession   NZ_CP096163
Coordinates   706944..708209 (+) Length   421 a.a.
NCBI ID   WP_011787902.1    Uniprot ID   A0A6N3J110
Organism   Shewanella sp. JNE10-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 701944..713209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZ018_RS02990 (MZ018_02990) nadC 702712..703599 (+) 888 WP_248084754.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MZ018_RS02995 (MZ018_02995) - 704524..704973 (+) 450 WP_248084753.1 pilin -
  MZ018_RS03000 (MZ018_03000) pilB 705063..706772 (+) 1710 WP_011920035.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MZ018_RS03005 (MZ018_03005) pilC 706944..708209 (+) 1266 WP_011787902.1 type II secretion system F family protein Machinery gene
  MZ018_RS03010 (MZ018_03010) pilD 708409..709335 (+) 927 WP_248084752.1 prepilin peptidase Machinery gene
  MZ018_RS03015 (MZ018_03015) coaE 709679..710296 (+) 618 WP_248067527.1 dephospho-CoA kinase -
  MZ018_RS03020 (MZ018_03020) zapD 710289..711023 (+) 735 WP_248084751.1 cell division protein ZapD -
  MZ018_RS03025 (MZ018_03025) yacG 711181..711390 (+) 210 WP_011920039.1 DNA gyrase inhibitor YacG -
  MZ018_RS03030 (MZ018_03030) mutT 711442..711846 (+) 405 WP_011787897.1 8-oxo-dGTP diphosphatase MutT -
  MZ018_RS03035 (MZ018_03035) - 712292..712828 (+) 537 WP_248067524.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46325.74 Da        Isoelectric Point: 10.2387

>NTDB_id=680140 MZ018_RS03005 WP_011787902.1 706944..708209(+) (pilC) [Shewanella sp. JNE10-2]
MATATTVKKPRPKKIEPKSQPKIFTFEWKGTNRDGKKTGGELKGATVAEVKSQLKSQGVNPKVVRKKASPFFARNPDIKP
MDIAMATRQIATMLAAGVPLVTTIEILGRGHEKLKMRDLLGTILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEDIFKGFGAELPAFTQMIIGISRWLQSSW
YLFFIAITVGIWLFVRAHRNSQMVRDRVDEFVLKIPVIGEILHKAAMARFSRTLATTFAAGVPLIDGMESAAGASGNAVY
RKALLKVRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=680140 MZ018_RS03005 WP_011787902.1 706944..708209(+) (pilC) [Shewanella sp. JNE10-2]
ATGGCTACGGCAACGACAGTAAAAAAGCCTCGCCCAAAGAAGATTGAGCCCAAAAGCCAACCAAAGATTTTTACCTTTGA
ATGGAAAGGCACTAACCGCGATGGCAAAAAAACGGGTGGTGAGTTAAAGGGTGCAACGGTTGCAGAGGTAAAAAGCCAGC
TCAAATCCCAAGGAGTAAATCCTAAGGTCGTACGAAAAAAAGCATCTCCTTTCTTTGCCCGTAATCCTGATATCAAGCCC
ATGGATATCGCGATGGCAACTCGCCAGATAGCGACTATGCTGGCCGCCGGCGTTCCGCTTGTGACCACAATAGAAATATT
GGGGCGTGGCCATGAAAAACTCAAAATGCGCGATCTGTTGGGGACAATTCTGTCAGAGATTCAATCGGGTATTCCGCTAT
CAGATGCCCTGCGCCCCCATAGGCGTTATTTTGATGATCTCTATGTAGACTTAGTGGCAGCAGGTGAGCATTCTGGTTCG
CTCGATGCGGTATTTGATCGTATTGCAACCTATAGAGAAAAAGCCGAGCAGCTAAAATCTAAAATCAAAAAAGCCATGTT
TTATCCCGCCGCCGTCGTGGTAGTCGCTATTTTAGTGACCACATTGTTATTACTCTTTGTCGTACCTCAGTTCGAAGATA
TTTTTAAAGGATTTGGCGCAGAACTCCCCGCCTTTACACAGATGATCATTGGTATCTCGCGATGGTTGCAAAGCTCTTGG
TATCTCTTTTTCATTGCGATTACAGTGGGGATTTGGTTATTTGTCCGTGCCCATCGCAATTCACAAATGGTTCGTGACCG
TGTTGATGAGTTTGTACTTAAGATCCCTGTTATCGGCGAAATTCTGCATAAGGCGGCCATGGCGCGCTTTTCTCGTACCT
TAGCCACCACCTTTGCGGCAGGTGTGCCGTTGATTGATGGGATGGAATCCGCAGCGGGAGCATCGGGTAATGCCGTATAT
CGCAAAGCACTGTTAAAAGTACGCCAAGAAGTCATGGCTGGTATGCAAATGAACGTCGCGATGCGTACTACGGGTTTGTT
CCCCGATATGCTGATCCAAATGGTGATGATTGGTGAAGAGTCTGGATCGCTAGATAATATGCTAAATAAGGTGGCTAATA
TTTATGAAATGCAAGTCGATGACGCTGTGGATGGTTTATCGAGTCTAATTGAACCCATTATGATGGTGGTGATTGGCACC
CTTGTGGGTGGTTTAATTGTGGGAATGTATCTCCCTATCTTCCAAATGGGAAATGTCGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N3J110

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.684

93.824

0.513
  pilC Acinetobacter baylyi ADP1

50.882

94.299

0.48
  pilC Legionella pneumophila strain ERS1305867

49.752

95.962

0.477
  pilC Acinetobacter baumannii D1279779

50.251

94.537

0.475
  pilC Vibrio cholerae strain A1552

46.867

94.774

0.444
  pilC Vibrio campbellii strain DS40M4

44.499

97.15

0.432
  pilG Neisseria gonorrhoeae MS11

41.294

95.487

0.394
  pilG Neisseria meningitidis 44/76-A

41.191

95.724

0.394