Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M0D47_RS16605 Genome accession   NZ_CP096140
Coordinates   3898095..3898541 (+) Length   148 a.a.
NCBI ID   WP_274704645.1    Uniprot ID   -
Organism   Xanthomonas prunicola strain MAI5037     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3893095..3903541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D47_RS16580 (M0D47_16565) coaE 3894429..3895037 (-) 609 WP_101361876.1 dephospho-CoA kinase -
  M0D47_RS16585 (M0D47_16570) - 3895051..3895914 (-) 864 WP_260812215.1 A24 family peptidase -
  M0D47_RS16590 (M0D47_16575) pilC 3895921..3897180 (-) 1260 WP_223646360.1 type II secretion system F family protein Machinery gene
  M0D47_RS16595 (M0D47_16580) - 3897535..3897975 (+) 441 WP_260812216.1 pilin -
  M0D47_RS16605 (M0D47_16590) pilA 3898095..3898541 (+) 447 WP_274704645.1 pilin Machinery gene
  M0D47_RS16610 (M0D47_16595) pilB 3898635..3900374 (+) 1740 WP_260812217.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M0D47_RS16615 (M0D47_16600) pilR 3900915..3902369 (-) 1455 WP_207759566.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 14869.26 Da        Isoelectric Point: 9.1337

>NTDB_id=679639 M0D47_RS16605 WP_274704645.1 3898095..3898541(+) (pilA) [Xanthomonas prunicola strain MAI5037]
MNRIQQGFTLVELMIVVAIIAILAGIALPAYQDYVVRARVSEAMVLASGLRASVITNASEGAADLSKGATLTTPLDKSPN
VVSTSISSANGVITVVTTAKAGGGTIMLTPTGAAGSALVAGVSPAGNIFWACTATIKQKYLPSSCTGN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=679639 M0D47_RS16605 WP_274704645.1 3898095..3898541(+) (pilA) [Xanthomonas prunicola strain MAI5037]
ATGAATAGGATTCAACAGGGGTTTACTCTCGTAGAGTTGATGATTGTAGTTGCAATCATCGCTATTTTGGCCGGCATTGC
CCTTCCTGCATATCAGGACTACGTAGTAAGGGCTAGAGTTTCTGAGGCTATGGTTTTAGCAAGTGGTTTGCGTGCTTCTG
TGATAACCAATGCCTCTGAAGGGGCTGCGGATCTATCGAAAGGAGCTACGCTTACGACGCCCTTAGATAAATCTCCTAAT
GTGGTTTCCACGAGTATCAGCAGCGCTAACGGTGTCATAACTGTTGTAACGACAGCAAAAGCAGGGGGGGGCACGATAAT
GCTAACGCCCACCGGGGCAGCTGGTTCGGCCTTGGTTGCAGGGGTTTCTCCTGCTGGAAATATCTTTTGGGCCTGTACTG
CCACAATTAAGCAAAAGTATTTGCCGTCTTCATGTACTGGGAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Pilin (bacterial filament) (Pilin)

(36-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

45

100

0.486
  pilA2 Legionella pneumophila str. Paris

48.951

96.622

0.473
  pilA2 Legionella pneumophila strain ERS1305867

48.951

96.622

0.473
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.168

100

0.453
  comP Acinetobacter baylyi ADP1

40.645

100

0.426
  pilA/pilA1 Eikenella corrodens VA1

34.969

100

0.385
  pilE Neisseria gonorrhoeae MS11

33.735

100

0.378