Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   M0D47_RS16610 Genome accession   NZ_CP096140
Coordinates   3898635..3900374 (+) Length   579 a.a.
NCBI ID   WP_260812217.1    Uniprot ID   -
Organism   Xanthomonas prunicola strain MAI5037     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3893635..3905374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D47_RS16580 (M0D47_16565) coaE 3894429..3895037 (-) 609 WP_101361876.1 dephospho-CoA kinase -
  M0D47_RS16585 (M0D47_16570) - 3895051..3895914 (-) 864 WP_260812215.1 A24 family peptidase -
  M0D47_RS16590 (M0D47_16575) pilC 3895921..3897180 (-) 1260 WP_223646360.1 type II secretion system F family protein Machinery gene
  M0D47_RS16595 (M0D47_16580) - 3897535..3897975 (+) 441 WP_260812216.1 pilin -
  M0D47_RS16605 (M0D47_16590) pilA 3898095..3898541 (+) 447 WP_274704645.1 pilin Machinery gene
  M0D47_RS16610 (M0D47_16595) pilB 3898635..3900374 (+) 1740 WP_260812217.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M0D47_RS16615 (M0D47_16600) pilR 3900915..3902369 (-) 1455 WP_207759566.1 sigma-54 dependent transcriptional regulator Regulator
  M0D47_RS16620 (M0D47_16605) - 3902640..3904253 (-) 1614 WP_101361866.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 62804.88 Da        Isoelectric Point: 5.6024

>NTDB_id=679640 M0D47_RS16610 WP_260812217.1 3898635..3900374(+) (pilB) [Xanthomonas prunicola strain MAI5037]
MNQVSSSANLVGITGIARRLVQDGALEEAAARIAMEQATAAKVPLPQWFSDKKLVSGAQLAAANAVEFGMPLMDVSAFDA
NQNAVKLVSEELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNASFGSSL
GNDDDEMGDLEVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKA
PVKLSQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIEKLGYEADQQ
KLFLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQD
PDIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKASL
PEHALLAEGFTPAQIAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQSIGIRDLRQSAL
MKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=679640 M0D47_RS16610 WP_260812217.1 3898635..3900374(+) (pilB) [Xanthomonas prunicola strain MAI5037]
GTGAACCAAGTATCAAGTAGCGCTAATTTGGTCGGCATCACAGGTATAGCCCGTCGGCTTGTCCAAGATGGGGCCTTAGA
AGAAGCTGCTGCTCGTATTGCGATGGAGCAGGCTACTGCAGCTAAAGTTCCGTTGCCACAATGGTTTTCTGATAAAAAAC
TAGTCTCCGGGGCTCAACTCGCTGCAGCCAACGCCGTTGAGTTCGGGATGCCGCTGATGGATGTGTCGGCGTTCGACGCC
AATCAGAACGCGGTCAAGCTGGTCAGTGAGGAGTTGCTCCAGAAGTACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCG
GTTGTTCGTGGGGGTGAGCAACCCGACCCAGACCCGGGCGCTGGACGATATCAAGTTCCATACGAACCTGGTTGTCGAGC
CTATCCTGGTCGACGAGGACCAGATTCGTCGCACTTTGGAGCAGTGGCAGGCAAGTAACGCTTCGTTTGGTTCGTCGTTG
GGGAACGACGATGACGAGATGGGGGACCTGGAGGTGTCGGCCGGGGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGT
CGATGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCCG
ACATCCATTTCGAGCCCTACGAAGACGATTACCGGGTGCGCTTGCGCATCGACGGCCTGCTGAAGAATGTGGCCAAGGCG
CCGGTGAAGCTGAGTCAGCGCATTGCCGCGCGCCTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCA
GGACGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTGAGCACCTTGCCGACCCTGTTCGGCG
AGAAGGTGGTGCTGCGTATTCTGGACGGCAGCGCAGCCAAGCTGGGCATCGAGAAGCTGGGCTATGAGGCGGACCAGCAG
AAGCTGTTCCTGGATGCGATCCACAAGCCCTACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCCGGCAAGACGGTGTC
GCTGTATACGGCCTTGGGCATCCTCAACGACGAGACGCGCAACATCTCCACGGCCGAGGATCCGGTGGAAATCCGCCTGC
CCGGCGTCAATCAGGTGCAGCAGAACAACAAGCGCGGCATGACGTTTGCCGCGGCCTTGCGCTCGTTCCTGCGCCAGGAC
CCGGACATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGCCACAT
GGTGCTATCGACGCTGCACACCAACGATGCGCCGCAGACCATCGCGCGCTTGATGAACATGGGCATTGCGCCGTACAACA
TCACTTCGTCGGTGACCCTGGTGATCGCGCAGCGTCTGGCGCGTCGGTTGTGCAACAACTGCAAGCGCAAGGCGAGCCTG
CCCGAGCATGCGTTGCTGGCCGAAGGCTTCACGCCGGCGCAGATCGCTGCCGGTATCGAACTGTACGAGGCGGTCGGTTG
CGACGAGTGCACCGAAGGCTACAAGGGCCGTACCGGTATCTATCAGGTGATGCCGATGACCGACGAGATCGGCGCGATCG
TGCTGGAAGGCGGCAATGCGATGCAGATCGCCGAGGCCGCGCAAAGTATCGGCATCCGTGATCTGCGCCAGTCGGCCTTG
ATGAAGGCCGCGCATGGGGTGACCAGCCTGGCGGAGATCAATCGGGTGACCAAGGACTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(202-469)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(52-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

55.634

98.1

0.546
  pilB Acinetobacter baumannii D1279779

55.282

98.1

0.542
  pilB Legionella pneumophila strain ERS1305867

52.373

98.273

0.515
  pilB Vibrio cholerae strain A1552

48.601

98.791

0.48
  pilF Neisseria gonorrhoeae MS11

48.768

98.1

0.478
  pilB Vibrio campbellii strain DS40M4

45.87

98.273

0.451
  pilB Vibrio parahaemolyticus RIMD 2210633

46.429

96.718

0.449