Detailed information NTG0679638

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: M0D47_RS16590
• Genome accession: NZ_CP096140
• Coordinates: 3895921..3897180 (-)
• Length: 419 a.a.
• NCBI ID: WP_223646360.1
• Uniprot ID: -
• Organism: Xanthomonas prunicola strain MAI5037
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3890921..3902180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0D47_RS16580 (M0D47_16565)	coaE	3894429..3895037 (-)	609	WP_101361876.1	dephospho-CoA kinase	-
M0D47_RS16585 (M0D47_16570)	-	3895051..3895914 (-)	864	WP_260812215.1	A24 family peptidase	-
M0D47_RS16590 (M0D47_16575)	pilC	3895921..3897180 (-)	1260	WP_223646360.1	type II secretion system F family protein	Machinery gene
M0D47_RS16595 (M0D47_16580)	-	3897535..3897975 (+)	441	WP_260812216.1	pilin	-
M0D47_RS16605 (M0D47_16590)	pilA	3898095..3898541 (+)	447	WP_274704645.1	pilin	Machinery gene
M0D47_RS16610 (M0D47_16595)	pilB	3898635..3900374 (+)	1740	WP_260812217.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 45856.24 Da
• Isoelectric Point: 10.2697

>NTDB_id=679638 M0D47_RS16590 WP_223646360.1 3895921..3897180(-) (pilC) [Xanthomonas prunicola strain MAI5037]
MSVTRSTLKKQPIDRSTSQMQAFVWEGTDKRGVKMKGEQVARNANMLRAELRRQGITPNVVKTKPKPLFGAAGKKVTPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKQMVGQVRSDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTIATYKENMEALKGKIKKALFYPAAVLAVALIVTAILLIFVVPQFEQVFSGFGAELPAFTKMIVAASRFMVSYWWL
ILFITLALGFGFLFAYKRSPSMQHGMDRLVLRLPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNAVYGE
AILRMRDDVSVGYPINMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVIG

Nucleotide

• Length: 1260 bp

>NTDB_id=679638 M0D47_RS16590 WP_223646360.1 3895921..3897180(-) (pilC) [Xanthomonas prunicola strain MAI5037]
ATGTCAGTCACACGTAGCACCTTAAAGAAGCAACCAATCGATCGCTCCACAAGTCAAATGCAGGCTTTTGTTTGGGAGGG
GACAGACAAACGCGGCGTGAAGATGAAAGGTGAGCAAGTCGCGCGTAACGCCAACATGTTACGTGCGGAATTGCGCAGGC
AGGGGATAACGCCCAATGTTGTGAAGACCAAGCCTAAACCCTTGTTCGGGGCAGCAGGCAAAAAAGTCACGCCTAAAGAT
ATAGCATTTTTCAGCCGCCAAATGGCGACGATGATGAAATCTGGAGTACCCATTGTAGGCTCGCTAGAGATCATTGGCGA
GGGACACAAAAACCCTCGCATGAAACAAATGGTTGGGCAAGTACGGAGCGATATTGAAGGCGGGTCGTCTTTATATGAAT
CCATCAGTAAGCATCCTGTCCAATTCGATGAACTTTATCGCAACCTGGTACGCGCAGGGGAAGGTGCTGGCGTATTGGAA
ACAGTGCTCGATACGATCGCAACCTATAAAGAAAATATGGAGGCACTTAAAGGAAAGATAAAGAAAGCATTATTTTATCC
GGCTGCAGTATTAGCTGTGGCATTGATTGTAACGGCGATCCTACTAATATTTGTTGTACCTCAATTCGAACAGGTTTTTA
GCGGATTTGGCGCCGAACTCCCGGCATTCACCAAGATGATCGTTGCTGCATCACGCTTCATGGTCTCCTATTGGTGGCTA
ATCTTATTCATCACACTAGCCCTAGGTTTTGGCTTCCTTTTTGCCTACAAACGTTCGCCAAGTATGCAACACGGTATGGA
TCGCCTAGTGCTTAGATTGCCGGTAATTGGGCAGATAATGCACAATAGCGCAATTGCTCGTTTCTCGAGGACTACAGCCG
TCACTTTCAAGGCCGGCGTACCATTAGTAGAGGCTTTAGGAATTGTCGCTGGAGCGACCGGTAATGCAGTGTATGGAGAG
GCAATACTTCGTATGCGAGATGATGTCTCTGTTGGCTACCCTATCAATATGGCAATGAAACAAGTCAATCTGTTCCCGCA
TATGGTGATTCAGATGACTGCAATCGGAGAGGAAGCGGGAGCATTGGATGCAATGTTATTTAAGGTAGCTGAATATTTTG
AGCAAGAAGTTAACAATGCGGTCGATGCACTGAGCAGCTTGTTAGAGCCAATGATCATGGTGTTCATTGGTACTATCGTA
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGGCGCAGTCATTGGATAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	51.724	96.897	0.501
pilC	Pseudomonas stutzeri DSM 10701	52.525	94.511	0.496
pilC	Acinetobacter baylyi ADP1	50.617	96.659	0.489
pilC	Acinetobacter baumannii D1279779	49.136	96.659	0.475
pilG	Neisseria gonorrhoeae MS11	44.059	96.42	0.425
pilG	Neisseria meningitidis 44/76-A	43.564	96.42	0.42
pilC	Vibrio cholerae strain A1552	39.702	96.181	0.382
pilC	Vibrio campbellii strain DS40M4	39.651	95.704	0.379