Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   OKF33_RS07380 Genome accession   NZ_CP109654
Coordinates   1425729..1426325 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain 10-02932     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1420729..1431325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS07360 - 1421484..1422248 (+) 765 WP_002781156.1 TIGR02757 family protein -
  OKF33_RS07365 - 1422251..1423015 (+) 765 WP_002784060.1 TSUP family transporter -
  OKF33_RS07370 ctsF 1423012..1424187 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  OKF33_RS07375 ctsE 1424174..1425736 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  OKF33_RS07380 ctsX 1425729..1426325 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  OKF33_RS07385 ctsP 1426322..1426918 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  OKF33_RS07390 ctsD 1426911..1428329 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  OKF33_RS07395 ctsR 1428307..1428618 (-) 312 WP_002795361.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=679637 OKF33_RS07380 WP_002779313.1 1425729..1426325(-) (ctsX) [Campylobacter coli strain 10-02932]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=679637 OKF33_RS07380 WP_002779313.1 1425729..1426325(-) (ctsX) [Campylobacter coli strain 10-02932]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434