Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG627_RS23720 Genome accession   NZ_CP109599
Coordinates   5398077..5398754 (+) Length   225 a.a.
NCBI ID   WP_329068250.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01429     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5393077..5403754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG627_RS23690 (OG627_23700) - 5393273..5394457 (-) 1185 WP_329068243.1 acyltransferase family protein -
  OG627_RS23695 (OG627_23705) - 5394946..5395140 (+) 195 WP_329068246.1 hypothetical protein -
  OG627_RS23710 (OG627_23720) tig 5395690..5397126 (+) 1437 WP_329068248.1 trigger factor -
  OG627_RS23715 (OG627_23725) clpP 5397414..5398019 (+) 606 WP_329072915.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG627_RS23720 (OG627_23730) clpP 5398077..5398754 (+) 678 WP_329068250.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG627_RS23725 (OG627_23735) clpX 5398922..5400214 (+) 1293 WP_329068252.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG627_RS23730 (OG627_23740) - 5400294..5401283 (-) 990 WP_329068254.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24569.90 Da        Isoelectric Point: 4.5793

>NTDB_id=679494 OG627_RS23720 WP_329068250.1 5398077..5398754(+) (clpP) [Streptomyces sp. NBC_01429]
MVNTPMNNYSASGLYSGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDR
DISIYINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRLALPNARVLIHQPSSQTGREQLSDLE
IAANEILRMRSQLEEMLARHSTTPIEKVRDDIERDKILTADDALAYGLVDQIVSTRKTTAAAAAA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=679494 OG627_RS23720 WP_329068250.1 5398077..5398754(+) (clpP) [Streptomyces sp. NBC_01429]
ATGGTGAACACTCCCATGAACAACTACTCCGCGAGCGGCCTCTACTCCGGCCCGCAGGTGGACAACCGTTACGTCGTGCC
GCGTTTCGTGGAGCGCACCTCGCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTCATCTTCC
TCGGTGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCCGACCGT
GACATCTCGATCTACATCAACAGCCCCGGCGGCTCGATGACGGCCCTCACGGCCATCTACGACACGATGCAGTTCGTGAA
GCCCGACATCCAGACCGTCTGCATGGGCCAGGCGGCCTCGGCCGCCGCCGTCCTGCTCGCCGCCGGTACCCCCGGCAAGC
GGCTGGCACTGCCCAACGCACGCGTGCTGATCCACCAGCCGTCCAGCCAGACCGGCCGTGAGCAGCTCTCCGACCTGGAG
ATCGCGGCCAACGAGATCCTCCGGATGCGCTCGCAGCTGGAGGAGATGCTCGCCCGGCACTCCACCACGCCGATCGAGAA
GGTCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGACGACGCGCTCGCGTACGGCCTGGTCGACCAGATCGTGT
CGACCCGCAAGACGACGGCAGCCGCAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(35-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.474

84.444

0.418
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.809

83.556

0.391
  clpP Streptococcus thermophilus LMD-9

45.361

86.222

0.391
  clpP Streptococcus thermophilus LMG 18311

45.361

86.222

0.391
  clpP Streptococcus pneumoniae Rx1

44.792

85.333

0.382
  clpP Streptococcus pneumoniae TIGR4

44.792

85.333

0.382
  clpP Streptococcus pneumoniae R6

44.792

85.333

0.382
  clpP Streptococcus pneumoniae D39

44.792

85.333

0.382
  clpP Streptococcus mutans UA159

44.737

84.444

0.378
  clpP Streptococcus pyogenes MGAS315

43.814

86.222

0.378
  clpP Streptococcus pyogenes JRS4

43.814

86.222

0.378
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

84.889

0.373
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

84.889

0.369