Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG627_RS23715 Genome accession   NZ_CP109599
Coordinates   5397414..5398019 (+) Length   201 a.a.
NCBI ID   WP_329072915.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01429     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 5392414..5403019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG627_RS23690 (OG627_23700) - 5393273..5394457 (-) 1185 WP_329068243.1 acyltransferase family protein -
  OG627_RS23695 (OG627_23705) - 5394946..5395140 (+) 195 WP_329068246.1 hypothetical protein -
  OG627_RS23710 (OG627_23720) tig 5395690..5397126 (+) 1437 WP_329068248.1 trigger factor -
  OG627_RS23715 (OG627_23725) clpP 5397414..5398019 (+) 606 WP_329072915.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG627_RS23720 (OG627_23730) clpP 5398077..5398754 (+) 678 WP_329068250.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG627_RS23725 (OG627_23735) clpX 5398922..5400214 (+) 1293 WP_329068252.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG627_RS23730 (OG627_23740) - 5400294..5401283 (-) 990 WP_329068254.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21143.95 Da        Isoelectric Point: 4.4663

>NTDB_id=679493 OG627_RS23715 WP_329072915.1 5397414..5398019(+) (clpP) [Streptomyces sp. NBC_01429]
MPYAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPDKDIYLYINSPGGSVTAGMAVYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGTSGKRFALPNTDILMHQGSAGIGGTASDIKIQAEYLLRTKKRMAEITAHHSGQSVE
TIIRDGDRDKWFTVEEAKDYGLIDEIISAASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=679493 OG627_RS23715 WP_329072915.1 5397414..5398019(+) (clpP) [Streptomyces sp. NBC_01429]
ATGCCTTACGCCGCCGGTGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGACTGCTCGGAGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACGGCGCAGCTCCTCCTTCTCGCGGCCGAGCCCG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGTGGTTCCGTCACGGCCGGCATGGCCGTCTACGACACCATGCAGTAC
ATCCCGAACGACGTCGTCACCATCGGTATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTGACCGGCGGCACCTCGGG
CAAGCGCTTCGCGCTGCCCAACACCGACATCCTGATGCACCAGGGCTCCGCCGGTATCGGCGGTACGGCCTCGGACATCA
AGATCCAGGCCGAGTACCTGCTCCGTACGAAGAAGCGGATGGCCGAGATCACGGCACACCACTCCGGCCAGAGCGTGGAA
ACGATCATCCGGGACGGCGACCGCGACAAGTGGTTCACCGTGGAAGAGGCCAAGGACTACGGCCTGATCGACGAGATCAT
CTCCGCTGCTTCGGGCGTTCCGGGCGGCGGCGGTACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.596

93.532

0.483
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.785

95.025

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.064

93.532

0.478
  clpP Bacillus subtilis subsp. subtilis str. 168

54.651

85.572

0.468
  clpP Streptococcus mutans UA159

52.023

86.07

0.448
  clpP Streptococcus pneumoniae TIGR4

50.282

88.06

0.443
  clpP Streptococcus pneumoniae Rx1

50.282

88.06

0.443
  clpP Streptococcus pneumoniae D39

50.282

88.06

0.443
  clpP Streptococcus pneumoniae R6

50.282

88.06

0.443
  clpP Streptococcus thermophilus LMG 18311

50.575

86.567

0.438
  clpP Streptococcus thermophilus LMD-9

50.575

86.567

0.438
  clpP Streptococcus pyogenes MGAS315

50.867

86.07

0.438
  clpP Streptococcus pyogenes JRS4

50.867

86.07

0.438