Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MY524_RS18560 Genome accession   NZ_CP096017
Coordinates   4095515..4096735 (-) Length   406 a.a.
NCBI ID   WP_250657342.1    Uniprot ID   -
Organism   Alkalimarinus coralli strain SCSIO 12638     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4090515..4101735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY524_RS18520 - 4090968..4091426 (+) 459 WP_250657334.1 PilZ domain-containing protein -
  MY524_RS18525 tsaA 4091455..4092168 (-) 714 WP_250657335.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  MY524_RS18530 - 4092165..4092884 (-) 720 WP_250657336.1 LrgB family protein -
  MY524_RS18535 - 4092877..4093239 (-) 363 WP_250657337.1 CidA/LrgA family protein -
  MY524_RS18540 - 4093265..4093705 (-) 441 WP_250657338.1 HIT family protein -
  MY524_RS18545 yacG 4093757..4093972 (-) 216 WP_250657339.1 DNA gyrase inhibitor YacG -
  MY524_RS18550 coaE 4093947..4094561 (-) 615 WP_250657340.1 dephospho-CoA kinase -
  MY524_RS18555 pilD 4094570..4095439 (-) 870 WP_250657341.1 prepilin peptidase Machinery gene
  MY524_RS18560 pilC 4095515..4096735 (-) 1221 WP_250657342.1 type II secretion system F family protein Machinery gene
  MY524_RS18565 pilB 4096738..4098447 (-) 1710 WP_250657343.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MY524_RS18575 - 4098783..4099238 (+) 456 WP_275975288.1 pilin -
  MY524_RS18580 - 4099327..4101252 (+) 1926 WP_250657344.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44392.02 Da        Isoelectric Point: 8.6435

>NTDB_id=679180 MY524_RS18560 WP_250657342.1 4095515..4096735(-) (pilC) [Alkalimarinus coralli strain SCSIO 12638]
MAEKAQKLGSFVWEGTDRKGNKTKGKTSGQNAALVKAQLRQQGITPTKVKKEAISLGGPKKKKITPFDIAIFTRQLATMM
KAGVPLIQSFDIVAEGLENPSLRDIVLEIKNDVAAGNNFAEALRKHPKYFDDLFCNLVNSGEQSGALETMLDRVATYMEK
TETLKKKVKKAMSYPIAVVVVAVIVTAILLIKVVPQFEELFSGFGAELPAFTQFVIGISEWMQEWWFIALGIIIATIFTF
KEAKRRSPTFADKVDHFILKIPVMGVIIDKSAIARFGRVLSTTFAAGVPLVDALDSVAGAAGNAKYRDAIYRIRDDVSTG
TQLQFSMKQTSVFPAMAVQLVSIGEESGALDSMLEKVADYYEEEVDALVDSLTSLMEPMIMAVLGVLVGGLIVAMYLPIF
QMGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=679180 MY524_RS18560 WP_250657342.1 4095515..4096735(-) (pilC) [Alkalimarinus coralli strain SCSIO 12638]
ATGGCAGAAAAGGCACAGAAATTAGGCTCTTTCGTTTGGGAAGGAACCGACCGAAAGGGTAATAAAACCAAAGGCAAAAC
ATCAGGTCAAAATGCTGCATTAGTAAAAGCTCAATTACGACAGCAAGGCATAACCCCTACAAAAGTGAAAAAAGAGGCTA
TTTCACTTGGCGGCCCAAAGAAAAAGAAAATAACGCCGTTTGATATAGCCATTTTTACTCGACAGCTGGCAACCATGATG
AAGGCAGGGGTGCCGCTAATTCAGTCATTTGATATCGTAGCAGAGGGGCTAGAAAACCCTAGTCTTAGGGATATTGTATT
GGAGATAAAGAACGATGTTGCCGCAGGGAATAACTTCGCAGAAGCTCTTCGTAAACACCCTAAATATTTTGATGATCTTT
TTTGCAACCTAGTTAATTCCGGTGAACAGTCAGGCGCACTCGAAACCATGCTTGACCGTGTCGCAACTTACATGGAAAAA
ACAGAGACACTGAAGAAAAAAGTCAAAAAAGCAATGAGCTACCCTATCGCAGTTGTCGTTGTCGCCGTGATTGTAACTGC
AATACTTTTAATTAAAGTAGTCCCCCAATTTGAAGAGCTCTTTTCTGGCTTTGGCGCAGAACTGCCTGCGTTTACTCAAT
TCGTCATAGGTATTTCCGAGTGGATGCAAGAGTGGTGGTTTATTGCTCTAGGTATTATTATCGCAACTATTTTCACATTC
AAAGAGGCCAAAAGAAGGTCTCCCACGTTCGCAGATAAGGTTGATCACTTTATTTTAAAAATACCTGTTATGGGGGTCAT
TATTGACAAATCTGCAATTGCTCGATTTGGCAGGGTTCTTTCTACAACCTTTGCGGCTGGCGTGCCCCTGGTAGATGCCC
TAGACTCCGTTGCAGGCGCCGCAGGCAATGCTAAGTACCGTGATGCCATTTATAGAATAAGAGACGATGTTTCCACAGGT
ACTCAACTTCAGTTTTCAATGAAGCAAACAAGTGTTTTTCCCGCGATGGCAGTCCAGCTAGTCTCCATTGGCGAAGAGTC
CGGTGCCCTAGACTCTATGCTTGAAAAAGTGGCAGATTACTATGAAGAAGAGGTTGACGCATTAGTAGATAGCCTTACAA
GCTTAATGGAACCCATGATAATGGCCGTATTGGGCGTTCTTGTGGGTGGCTTAATCGTCGCGATGTATTTACCAATATTC
CAGATGGGGCAGGTAGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(278-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.749

100

0.667
  pilC Acinetobacter baumannii D1279779

61.728

99.754

0.616
  pilC Acinetobacter baylyi ADP1

60.591

100

0.606
  pilC Legionella pneumophila strain ERS1305867

54.926

100

0.549
  pilG Neisseria gonorrhoeae MS11

43.921

99.261

0.436
  pilG Neisseria meningitidis 44/76-A

43.921

99.261

0.436
  pilC Vibrio campbellii strain DS40M4

40.541

100

0.406
  pilC Vibrio cholerae strain A1552

40.741

99.754

0.406
  pilC Thermus thermophilus HB27

36.973

99.261

0.367