Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG195_RS21825 Genome accession   NZ_CP109586
Coordinates   4870164..4871294 (+) Length   376 a.a.
NCBI ID   WP_266689827.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01362     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4865164..4876294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG195_RS21815 (OG195_21785) dnaN 4867905..4869035 (+) 1131 WP_072487582.1 DNA polymerase III subunit beta -
  OG195_RS21820 (OG195_21790) gnd 4869201..4870079 (+) 879 WP_124719870.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG195_RS21825 (OG195_21795) recF 4870164..4871294 (+) 1131 WP_266689827.1 DNA replication/repair protein RecF Machinery gene
  OG195_RS21830 (OG195_21800) - 4871291..4871863 (+) 573 WP_329590863.1 DciA family protein -
  OG195_RS21835 (OG195_21805) gyrB 4872277..4874382 (+) 2106 WP_323180410.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40869.54 Da        Isoelectric Point: 6.8623

>NTDB_id=679181 OG195_RS21825 WP_266689827.1 4870164..4871294(+) (recF) [Streptomyces sp. NBC_01362]
MHVTHLSLADFRSYARVEVPLEPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGADRAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGPLALEYRSSVGAGVE
SARTREELYEQLIAALAEVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASYDLLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGTRFAVSAGEVERL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=679181 OG195_RS21825 WP_266689827.1 4870164..4871294(+) (recF) [Streptomyces sp. NBC_01362]
ATGCATGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTACCTCTCGAACCGGGCGTCACCGC
GTTCGTGGGGGCCAACGGCCAGGGCAAGACGAATCTGGTCGAGGCGGTCGGCTATCTCGCGACGCTCGGCAGCCACCGGG
TCTCCTCCGACGCGCCGCTGGTGCGGATGGGCGCCGACCGGGCCGTGATCCGTGCCGCCGTGACGCAGGGGGAGCGTTCG
CAGCTGATCGAGCTGGAGCTCAATCCCGGCAGGGCCAACCGGGCCCGTATCAATAGATCGTCGCAGGTCAGGCCCCGTGA
CGTGCTGGGGATAGTACGTACGGTGCTGTTCGCGCCGGAGGACCTGGCGCTGGTCAAGGGCGACCCCGGGGAGCGCCGGC
GCTTCCTCGACGAGCTGATCACGGCCCGTTCGCCGCGGATGGCCGGGGTGCGCTCGGACTACGAGCGGGTGCTGAAGCAG
CGCAACACCCTGCTGAAGTCGGCGGCGATGGCGCGCCGGCACGGCGGCCGGTCGATGGATCTGTCCACGCTCGACGTGTG
GGACCAGCACCTGGGCCGGGTGGGCGCGGAGCTGCTGGCGCAGCGGCTGGATCTGATCGCCACCCTTCAGCCGCTGGCGG
ACAAGGCGTACGCGGATGTCGCGCCGGGCGGCGGCCCGCTGGCGCTGGAGTACCGCAGCTCGGTCGGGGCGGGCGTGGAG
TCCGCGCGTACCCGTGAGGAGCTGTACGAGCAGCTGATCGCCGCCCTCGCGGAGGTCCGCAAGCAGGAGATCGAGCGGGG
CGTGACGCTGGTCGGGCCGCACCGCGACGATCTGCTGCTGGGGCTGCGGGGCATGCCGGCCAAGGGGTACGCGAGCCATG
GCGAGTCCTGGTCGTACGCGCTGGCGCTGCGGCTGGCCTCGTACGATCTGCTGCGCAGCGAGGGCAACGAGCCGGTGCTG
GTGCTGGACGACGTCTTCGCGGAGCTGGACGCCCGGCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCGGGCGAACAGGT
GCTCGTGACGGCCGCGGTGGACGACGACGTTCCGGGGGTGCTGGCGGGGACCCGGTTCGCGGTGTCCGCGGGTGAGGTGG
AGCGGCTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.202

94.681

0.362