Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MYA83_RS04230 Genome accession   NZ_CP095871
Coordinates   959292..960500 (-) Length   402 a.a.
NCBI ID   WP_104995486.1    Uniprot ID   A0A2L1JF37
Organism   Pseudomonas palleroniana strain B-BH16-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 954292..965500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA83_RS04195 (MYA83_04180) - 955624..955797 (-) 174 WP_060754865.1 DUF3094 family protein -
  MYA83_RS04200 (MYA83_04185) - 955887..956516 (-) 630 WP_053254334.1 DUF1780 domain-containing protein -
  MYA83_RS04205 (MYA83_04190) - 956645..957334 (+) 690 WP_161548296.1 energy-coupling factor ABC transporter permease -
  MYA83_RS04210 (MYA83_04195) - 957400..957615 (+) 216 WP_003171680.1 hypothetical protein -
  MYA83_RS04215 (MYA83_04200) yacG 957612..957812 (-) 201 WP_060754867.1 DNA gyrase inhibitor YacG -
  MYA83_RS04220 (MYA83_04205) coaE 957809..958432 (-) 624 WP_060754868.1 dephospho-CoA kinase -
  MYA83_RS04225 (MYA83_04210) pilD 958429..959295 (-) 867 WP_104995485.1 prepilin peptidase Machinery gene
  MYA83_RS04230 (MYA83_04215) pilC 959292..960500 (-) 1209 WP_104995486.1 type II secretion system F family protein Machinery gene
  MYA83_RS04235 (MYA83_04220) - 960704..961117 (+) 414 WP_060754871.1 pilin -
  MYA83_RS04245 (MYA83_04230) - 961418..961720 (+) 303 WP_060754872.1 DUF6388 family protein -
  MYA83_RS04250 (MYA83_04235) nadC 961865..962713 (-) 849 WP_090366842.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MYA83_RS04255 (MYA83_04240) - 962953..965109 (+) 2157 WP_419794592.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43376.98 Da        Isoelectric Point: 10.2577

>NTDB_id=678904 MYA83_RS04230 WP_104995486.1 959292..960500(-) (pilC) [Pseudomonas palleroniana strain B-BH16-1]
MNDASTIYAWEGINRKGRRVSGKTTGHDLASIKAQLRRQGICPGRVRKQAQGLPILAPAIKPADIALFTRQLATLLTAGI
PLLQAFDIIRESVENQQLRELLKGLKQEIAAGTNLAAALRKHPRYFDDLYCNLIAAGEQAGALETLLERVAIHLEKSQRL
KARVKKAMTYPIAILVVATLVSTVLLIHVVPQFQNLFAGVDSPLPGFTLWVIALSEFLQRAWWLVALSLGATTFGLRLAH
RTSPGFRHRLEAGLLKLPLAGTLLKKSAIARYARTLSTTFAAGVPLVQALSSAAGAVGIGPFKQAIERMRHDVSTGMQLN
HCMAASGLFPGMAVQMTAIGEESGTLDGMLEKVASHYEADVDHLVDNLTSLMEPLIMVVLGGIVGALVLAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=678904 MYA83_RS04230 WP_104995486.1 959292..960500(-) (pilC) [Pseudomonas palleroniana strain B-BH16-1]
ATGAACGACGCTTCGACGATCTACGCCTGGGAAGGCATCAACCGTAAAGGGCGCAGGGTGAGCGGAAAAACCACCGGTCA
CGACCTTGCATCGATCAAGGCCCAACTGCGCCGGCAAGGGATCTGCCCCGGTCGCGTGCGCAAGCAAGCCCAGGGCCTGC
CAATCCTCGCTCCTGCAATAAAGCCCGCCGATATTGCGTTGTTCACTCGTCAGTTGGCGACGCTGCTGACGGCCGGCATC
CCCTTGCTGCAGGCATTCGACATCATTCGTGAAAGCGTCGAAAACCAACAGCTGCGCGAACTGCTCAAGGGGCTGAAACA
GGAGATTGCCGCCGGCACCAATCTGGCAGCCGCACTGCGCAAGCACCCGCGCTACTTCGATGACTTGTATTGCAACCTGA
TCGCCGCCGGAGAACAAGCCGGCGCCCTGGAAACCCTGCTGGAGCGCGTGGCAATCCATCTGGAAAAAAGCCAACGGCTC
AAGGCCAGGGTCAAGAAAGCCATGACCTACCCTATCGCGATCCTGGTGGTTGCCACTCTGGTCAGTACGGTGCTGCTGAT
CCATGTGGTGCCGCAGTTCCAGAACCTGTTCGCGGGGGTCGACAGCCCCTTGCCCGGCTTTACCCTGTGGGTCATTGCCT
TGTCCGAATTCCTGCAGCGCGCCTGGTGGTTAGTGGCACTGAGCCTGGGCGCGACAACTTTCGGGCTACGCCTGGCCCAT
CGGACCTCTCCGGGCTTTCGTCACAGGCTGGAAGCGGGTTTGTTGAAACTGCCCCTGGCGGGCACACTGCTGAAGAAGTC
CGCCATCGCCCGCTACGCCCGTACGCTCTCGACTACCTTTGCCGCAGGCGTGCCGCTGGTGCAGGCCTTGAGCTCGGCAG
CCGGCGCCGTCGGCATTGGCCCCTTCAAACAGGCAATCGAACGTATGCGCCATGATGTCTCCACCGGCATGCAACTGAAT
CACTGCATGGCCGCCAGCGGTTTGTTTCCAGGCATGGCGGTCCAGATGACGGCCATCGGTGAAGAGTCCGGCACGCTGGA
TGGCATGCTGGAAAAAGTCGCGAGCCATTACGAGGCCGATGTGGACCACCTGGTCGATAACCTCACCAGCCTGATGGAAC
CCCTGATCATGGTAGTGCTGGGCGGTATTGTCGGTGCGTTGGTCCTTGCCATGTACCTGCCGGTCTTCCAATTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L1JF37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.784

99.005

0.562
  pilC Acinetobacter baylyi ADP1

50.253

98.507

0.495
  pilC Acinetobacter baumannii D1279779

48.354

98.259

0.475
  pilC Legionella pneumophila strain ERS1305867

47.607

98.756

0.47
  pilG Neisseria gonorrhoeae MS11

40.779

95.771

0.391
  pilC Vibrio cholerae strain A1552

39.34

98.01

0.386
  pilG Neisseria meningitidis 44/76-A

39.583

95.522

0.378
  pilC Vibrio campbellii strain DS40M4

38.071

98.01

0.373
  pilC Thermus thermophilus HB27

37.343

99.254

0.371