Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG747_RS14555 Genome accession   NZ_CP109559
Coordinates   3214750..3215355 (-) Length   201 a.a.
NCBI ID   WP_149513863.1    Uniprot ID   A0A5B0AVB9
Organism   Streptomyces sp. NBC_01384     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3209750..3220355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG747_RS14540 (OG747_14585) - 3211386..3212384 (+) 999 WP_405879746.1 hypothetical protein -
  OG747_RS14545 (OG747_14590) clpX 3212474..3213760 (-) 1287 WP_390927316.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG747_RS14550 (OG747_14595) clpP 3213932..3214612 (-) 681 WP_362087703.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG747_RS14555 (OG747_14600) clpP 3214750..3215355 (-) 606 WP_149513863.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG747_RS14560 (OG747_14605) tig 3215796..3217193 (-) 1398 WP_405879747.1 trigger factor -
  OG747_RS14575 (OG747_14620) - 3217938..3218132 (-) 195 WP_329368370.1 hypothetical protein -
  OG747_RS14580 (OG747_14625) - 3218764..3219858 (+) 1095 WP_405879749.1 acyltransferase family protein -
  OG747_RS14585 (OG747_14630) - 3219865..3220320 (-) 456 WP_405879750.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21263.22 Da        Isoelectric Point: 4.6663

>NTDB_id=678749 OG747_RS14555 WP_149513863.1 3214750..3215355(-) (clpP) [Streptomyces sp. NBC_01384]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQYI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVEQ
VTRDSDRDRWFDPIEAKEYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=678749 OG747_RS14555 WP_149513863.1 3214750..3215355(-) (clpP) [Streptomyces sp. NBC_01384]
ATGCCCACAGCTGCCGGCGACCCCATCGGTGGTGGCCTCGGAGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGATGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCTCCGACCCGGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGTATGGCGATCTACGACACCATGCAGTACATC
AAGAACGATGTGGTGACGATCGCGATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGGCAA
GCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCGGCCGGCCTCGCCGGTTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCGCCTTCCACACCGGTCAGACGGTCGAGCAG
GTCACTCGTGACTCGGACCGCGACCGCTGGTTCGATCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCATGCC
CACCGCTGCCGGTATGCCGGGCGGTGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0AVB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.615

93.035

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

94.03

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

94.03

0.488
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.598

86.567

0.473
  clpP Streptococcus mutans UA159

54.335

86.07

0.468
  clpP Streptococcus thermophilus LMD-9

53.179

86.07

0.458
  clpP Streptococcus thermophilus LMG 18311

53.179

86.07

0.458
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pneumoniae Rx1

52.601

86.07

0.453
  clpP Streptococcus pneumoniae D39

52.601

86.07

0.453
  clpP Streptococcus pneumoniae R6

52.601

86.07

0.453
  clpP Streptococcus pneumoniae TIGR4

52.601

86.07

0.453